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0050187
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050187 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-959
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050187
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1291355.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1259032.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1259703.662678, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 26509.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 287065.558559, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 267244.625604, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 554310.184163, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 242767.075339, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 236462.403176, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 479229.478515, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 67388.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 752928.184163, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1130057.662678, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1103548.662678, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1100178.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 2251952.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.766562, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.336783, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 46, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 51, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 97, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1684605.103023, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 03:02:23 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 19:18:21 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 19:18:21 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4     12600    12714.2  Left-Lateral-Ventricle            19.1088    12.5247     1.0000    88.0000    87.0000 
    82. 

  82.   2   5       378      398.9  Left-Inf-Lat-Vent                 35.1587    15.9391     3.0000    78.0000    75.0000 
    83. 

  83.   3   7     14359    14731.1  Left-Cerebellum-White-Matter      78.2190     8.3662    21.0000   105.0000    84.0000 
    84. 

  84.   4   8     65151    65100.3  Left-Cerebellum-Cortex            53.4474    12.0199     1.0000    99.0000    98.0000 
    85. 

  85.   5  10      9437     9279.2  Left-Thalamus-Proper              80.2035    10.6311    31.0000   114.0000    83.0000 
    86. 

  86.   6  11      4081     4065.8  Left-Caudate                      67.1284     8.3484    19.0000    97.0000    78.0000 
    87. 

  87.   7  12      6048     6000.9  Left-Putamen                      75.0680     7.7973    39.0000   105.0000    66.0000 
    88. 

  88.   8  13      2359     2297.2  Left-Pallidum                     91.4188     6.5355    58.0000   112.0000    54.0000 
    89. 

  89.   9  14      1681     1652.4  3rd-Ventricle                     22.9465    14.4840     1.0000    82.0000    81.0000 
    90. 

  90.  10  15      2974     3048.3  4th-Ventricle                     19.8958    10.7255     2.0000    73.0000    71.0000 
    91. 

  91.  11  16     21979    22063.7  Brain-Stem                        79.6819    10.4494     3.0000   117.0000   114.0000 
    92. 

  92.  12  17      4550     4373.1  Left-Hippocampus                  58.2719    10.8289    16.0000   110.0000    94.0000 
    93. 

  93.  13  18      1805     1758.8  Left-Amygdala                     57.1169     8.1121    26.0000    84.0000    58.0000 
    94. 

  94.  14  24      1159     1052.8  CSF                               35.7420    15.9214     1.0000    80.0000    79.0000 
    95. 

  95.  15  26       597      581.5  Left-Accumbens-area               66.1340     7.3099    14.0000    89.0000    75.0000 
    96. 

  96.  16  28      4688     4588.7  Left-VentralDC                    86.6135    11.8590    18.0000   118.0000   100.0000 
    97. 

  97.  17  30        47       56.9  Left-vessel                       50.5745    11.5113    28.0000    76.0000    48.0000 
    98. 

  98.  18  31       584      551.1  Left-choroid-plexus               50.3990    12.4068    17.0000    84.0000    67.0000 
    99. 

  99.  19  43     11879    11956.3  Right-Lateral-Ventricle           20.0141    13.0603     1.0000    92.0000    91.0000 
    100. 

  100.  20  44       453      499.8  Right-Inf-Lat-Vent                32.6247    15.2767     1.0000    77.0000    76.0000 
    101. 

  101.  21  46     13123    13658.4  Right-Cerebellum-White-Matter     83.7190     7.6907    31.0000   109.0000    78.0000 
    102. 

  102.  22  47     64750    64562.0  Right-Cerebellum-Cortex           56.4763    11.9262     1.0000    99.0000    98.0000 
    103. 

  103.  23  49      9331     9130.1  Right-Thalamus-Proper             81.5364    10.5048    27.0000   113.0000    86.0000 
    104. 

  104.  24  50      4394     4291.6  Right-Caudate                     66.9242     8.6244    28.0000   100.0000    72.0000 
    105. 

  105.  25  51      6275     6188.2  Right-Putamen                     73.7646     7.6590    27.0000   101.0000    74.0000 
    106. 

  106.  26  52      2356     2277.6  Right-Pallidum                    91.2784     5.4464    66.0000   108.0000    42.0000 
    107. 

  107.  27  53      4244     4140.2  Right-Hippocampus                 61.0801     9.8424    13.0000   109.0000    96.0000 
    108. 

  108.  28  54      2152     2091.8  Right-Amygdala                    58.9201     8.3235    22.0000    95.0000    73.0000 
    109. 

  109.  29  58       646      609.0  Right-Accumbens-area              65.2167     7.2014    43.0000    95.0000    52.0000 
    110. 

  110.  30  60      4475     4346.1  Right-VentralDC                   87.7077    12.4070    27.0000   125.0000    98.0000 
    111. 

  111.  31  62        17       27.0  Right-vessel                      51.0000    15.3989    24.0000    89.0000    65.0000 
    112. 

  112.  32  63       615      574.6  Right-choroid-plexus              49.0309    12.4409     8.0000    79.0000    71.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       940      883.0  WM-hypointensities                70.7894    11.3184    20.0000   102.0000    82.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       226      256.4  Optic-Chiasm                      83.0487    20.6131    13.0000   125.0000   112.0000 
    121. 

  121.  41 251      1226     1175.2  CC_Posterior                     103.0179    13.3873    32.0000   124.0000    92.0000 
    122. 

  122.  42 252       681      607.2  CC_Mid_Posterior                  91.9339    19.6353    18.0000   125.0000   107.0000 
    123. 

  123.  43 253       681      636.5  CC_Central                        94.3142    16.8748    24.0000   129.0000   105.0000 
    124. 

  124.  44 254      1013     1003.8  CC_Mid_Anterior                   94.0632    17.1315    28.0000   123.0000    95.0000 
    125. 

  125.  45 255      1116     1070.5  CC_Anterior                      103.2177    16.0230    19.0000   131.0000   112.0000 
    126.