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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050187
- # sysname Linux
- # hostname tars-959
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0050187
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1291355.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1259032.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1259703.662678, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 26509.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 287065.558559, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 267244.625604, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 554310.184163, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 242767.075339, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 236462.403176, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 479229.478515, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 67388.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 752928.184163, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1130057.662678, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1103548.662678, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1100178.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 2251952.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.766562, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.336783, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 46, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 51, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 97, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1684605.103023, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 03:02:23
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 19:18:21
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 19:18:21
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 12600 12714.2 Left-Lateral-Ventricle 19.1088 12.5247 1.0000 88.0000 87.0000
- 2 5 378 398.9 Left-Inf-Lat-Vent 35.1587 15.9391 3.0000 78.0000 75.0000
- 3 7 14359 14731.1 Left-Cerebellum-White-Matter 78.2190 8.3662 21.0000 105.0000 84.0000
- 4 8 65151 65100.3 Left-Cerebellum-Cortex 53.4474 12.0199 1.0000 99.0000 98.0000
- 5 10 9437 9279.2 Left-Thalamus-Proper 80.2035 10.6311 31.0000 114.0000 83.0000
- 6 11 4081 4065.8 Left-Caudate 67.1284 8.3484 19.0000 97.0000 78.0000
- 7 12 6048 6000.9 Left-Putamen 75.0680 7.7973 39.0000 105.0000 66.0000
- 8 13 2359 2297.2 Left-Pallidum 91.4188 6.5355 58.0000 112.0000 54.0000
- 9 14 1681 1652.4 3rd-Ventricle 22.9465 14.4840 1.0000 82.0000 81.0000
- 10 15 2974 3048.3 4th-Ventricle 19.8958 10.7255 2.0000 73.0000 71.0000
- 11 16 21979 22063.7 Brain-Stem 79.6819 10.4494 3.0000 117.0000 114.0000
- 12 17 4550 4373.1 Left-Hippocampus 58.2719 10.8289 16.0000 110.0000 94.0000
- 13 18 1805 1758.8 Left-Amygdala 57.1169 8.1121 26.0000 84.0000 58.0000
- 14 24 1159 1052.8 CSF 35.7420 15.9214 1.0000 80.0000 79.0000
- 15 26 597 581.5 Left-Accumbens-area 66.1340 7.3099 14.0000 89.0000 75.0000
- 16 28 4688 4588.7 Left-VentralDC 86.6135 11.8590 18.0000 118.0000 100.0000
- 17 30 47 56.9 Left-vessel 50.5745 11.5113 28.0000 76.0000 48.0000
- 18 31 584 551.1 Left-choroid-plexus 50.3990 12.4068 17.0000 84.0000 67.0000
- 19 43 11879 11956.3 Right-Lateral-Ventricle 20.0141 13.0603 1.0000 92.0000 91.0000
- 20 44 453 499.8 Right-Inf-Lat-Vent 32.6247 15.2767 1.0000 77.0000 76.0000
- 21 46 13123 13658.4 Right-Cerebellum-White-Matter 83.7190 7.6907 31.0000 109.0000 78.0000
- 22 47 64750 64562.0 Right-Cerebellum-Cortex 56.4763 11.9262 1.0000 99.0000 98.0000
- 23 49 9331 9130.1 Right-Thalamus-Proper 81.5364 10.5048 27.0000 113.0000 86.0000
- 24 50 4394 4291.6 Right-Caudate 66.9242 8.6244 28.0000 100.0000 72.0000
- 25 51 6275 6188.2 Right-Putamen 73.7646 7.6590 27.0000 101.0000 74.0000
- 26 52 2356 2277.6 Right-Pallidum 91.2784 5.4464 66.0000 108.0000 42.0000
- 27 53 4244 4140.2 Right-Hippocampus 61.0801 9.8424 13.0000 109.0000 96.0000
- 28 54 2152 2091.8 Right-Amygdala 58.9201 8.3235 22.0000 95.0000 73.0000
- 29 58 646 609.0 Right-Accumbens-area 65.2167 7.2014 43.0000 95.0000 52.0000
- 30 60 4475 4346.1 Right-VentralDC 87.7077 12.4070 27.0000 125.0000 98.0000
- 31 62 17 27.0 Right-vessel 51.0000 15.3989 24.0000 89.0000 65.0000
- 32 63 615 574.6 Right-choroid-plexus 49.0309 12.4409 8.0000 79.0000 71.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 940 883.0 WM-hypointensities 70.7894 11.3184 20.0000 102.0000 82.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 226 256.4 Optic-Chiasm 83.0487 20.6131 13.0000 125.0000 112.0000
- 41 251 1226 1175.2 CC_Posterior 103.0179 13.3873 32.0000 124.0000 92.0000
- 42 252 681 607.2 CC_Mid_Posterior 91.9339 19.6353 18.0000 125.0000 107.0000
- 43 253 681 636.5 CC_Central 94.3142 16.8748 24.0000 129.0000 105.0000
- 44 254 1013 1003.8 CC_Mid_Anterior 94.0632 17.1315 28.0000 123.0000 95.0000
- 45 255 1116 1070.5 CC_Anterior 103.2177 16.0230 19.0000 131.0000 112.0000
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