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reference-preprocessing
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ABIDE_fs-6.0.0
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ABIDE_fs-6.0.0
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0051261
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051261 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-901
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051261
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1214567.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1196243.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1196554.595589, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 14404.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 272542.884636, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 275469.710009, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 548012.594645, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 216693.546413, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 216132.454530, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 432826.000943, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 63013.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 733333.594645, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1060978.595589, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1046574.595589, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1043410.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1579696.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.808018, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.050928, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 30, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 33, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 63, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1503143.871182, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 05:51:37 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 21:45:25 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 21:45:25 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      7211     7473.8  Left-Lateral-Ventricle            19.6174    13.7369     0.0000    79.0000    79.0000 
    82. 

  82.   2   5       586      634.8  Left-Inf-Lat-Vent                 37.7850    14.6096     2.0000    72.0000    70.0000 
    83. 

  83.   3   7     15941    16262.0  Left-Cerebellum-White-Matter      80.1634     8.4195    28.0000   115.0000    87.0000 
    84. 

  84.   4   8     60092    60354.9  Left-Cerebellum-Cortex            54.1132    11.1811     3.0000   103.0000   100.0000 
    85. 

  85.   5  10      7296     7035.1  Left-Thalamus-Proper              79.6198    11.3337    26.0000   107.0000    81.0000 
    86. 

  86.   6  11      4624     4616.3  Left-Caudate                      69.0056     8.9527    32.0000    98.0000    66.0000 
    87. 

  87.   7  12      5782     5775.6  Left-Putamen                      75.8916     7.2112    23.0000   108.0000    85.0000 
    88. 

  88.   8  13      2342     2297.0  Left-Pallidum                     93.6759     5.6045    68.0000   112.0000    44.0000 
    89. 

  89.   9  14      1064     1128.1  3rd-Ventricle                     28.2011    13.9420     2.0000    64.0000    62.0000 
    90. 

  90.  10  15      1690     1805.4  4th-Ventricle                     22.7325    12.1196     0.0000    73.0000    73.0000 
    91. 

  91.  11  16     22766    22864.8  Brain-Stem                        77.5204     9.5619    17.0000   114.0000    97.0000 
    92. 

  92.  12  17      4208     4025.0  Left-Hippocampus                  57.2562     9.7652    13.0000    96.0000    83.0000 
    93. 

  93.  13  18      1514     1439.9  Left-Amygdala                     59.6268     8.0578    29.0000    88.0000    59.0000 
    94. 

  94.  14  24      1166     1160.1  CSF                               34.5034    14.4687     1.0000    78.0000    77.0000 
    95. 

  95.  15  26       728      719.7  Left-Accumbens-area               65.2720     5.9766    37.0000    84.0000    47.0000 
    96. 

  96.  16  28      4481     4336.3  Left-VentralDC                    85.6978    11.9945    21.0000   117.0000    96.0000 
    97. 

  97.  17  30        40       53.7  Left-vessel                       49.7500    13.8522    16.0000    84.0000    68.0000 
    98. 

  98.  18  31       608      541.0  Left-choroid-plexus               47.1760    13.8276    14.0000    84.0000    70.0000 
    99. 

  99.  19  43      5114     5386.0  Right-Lateral-Ventricle           23.5501    14.8207     0.0000    85.0000    85.0000 
    100. 

  100.  20  44       223      285.0  Right-Inf-Lat-Vent                40.7713    11.3243    10.0000    75.0000    65.0000 
    101. 

  101.  21  46     14397    14921.9  Right-Cerebellum-White-Matter     79.1250     6.8416    23.0000   100.0000    77.0000 
    102. 

  102.  22  47     60884    60939.9  Right-Cerebellum-Cortex           55.3813    10.5450     0.0000   100.0000   100.0000 
    103. 

  103.  23  49      7498     7225.5  Right-Thalamus-Proper             80.0476    11.0188    20.0000   109.0000    89.0000 
    104. 

  104.  24  50      4827     4757.7  Right-Caudate                     67.7394     9.2170    34.0000    97.0000    63.0000 
    105. 

  105.  25  51      6251     6125.5  Right-Putamen                     75.5817     7.9397    23.0000   104.0000    81.0000 
    106. 

  106.  26  52      2151     2084.8  Right-Pallidum                    93.2789     5.7368    73.0000   115.0000    42.0000 
    107. 

  107.  27  53      4354     4195.1  Right-Hippocampus                 59.6647     9.5261    11.0000   105.0000    94.0000 
    108. 

  108.  28  54      1702     1653.7  Right-Amygdala                    58.7879     7.9085    10.0000    92.0000    82.0000 
    109. 

  109.  29  58       768      734.3  Right-Accumbens-area              65.0964     6.7113    41.0000    90.0000    49.0000 
    110. 

  110.  30  60      4516     4337.4  Right-VentralDC                   85.1132    12.6533    23.0000   121.0000    98.0000 
    111. 

  111.  31  62        17       25.1  Right-vessel                      47.1765    12.6008    30.0000    70.0000    40.0000 
    112. 

  112.  32  63       662      609.6  Right-choroid-plexus              51.0937    13.7167    16.0000    84.0000    68.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77       974      862.3  WM-hypointensities                69.2618    11.8359    27.0000   106.0000    79.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       193      199.1  Optic-Chiasm                      76.0984    18.8885    24.0000   116.0000    92.0000 
    121. 

  121.  41 251       805      764.5  CC_Posterior                     101.5764    13.9548    44.0000   124.0000    80.0000 
    122. 

  122.  42 252       503      457.1  CC_Mid_Posterior                  93.4732    19.7531    22.0000   124.0000   102.0000 
    123. 

  123.  43 253       442      394.5  CC_Central                        95.4412    19.4431    19.0000   123.0000   104.0000 
    124. 

  124.  44 254       407      370.0  CC_Mid_Anterior                   99.4545    17.1614    41.0000   121.0000    80.0000 
    125. 

  125.  45 255       932      882.0  CC_Anterior                      104.6588    16.3512    30.0000   132.0000   102.0000 
    126.