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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0051261
- # sysname Linux
- # hostname tars-901
- # machine x86_64
- # user ntraut
- # anatomy_type volume
- #
- # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
- # subjectname 0051261
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1214567.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1196243.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1196554.595589, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 14404.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 272542.884636, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 275469.710009, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 548012.594645, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 216693.546413, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 216132.454530, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 432826.000943, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 63013.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 733333.594645, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1060978.595589, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1046574.595589, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1043410.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1579696.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.808018, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.050928, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 30, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 33, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 63, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1503143.871182, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2017/10/08 05:51:37
- # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/01/18 23:00:02
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2017/10/07 21:45:25
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2017/10/07 21:45:25
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 7211 7473.8 Left-Lateral-Ventricle 19.6174 13.7369 0.0000 79.0000 79.0000
- 2 5 586 634.8 Left-Inf-Lat-Vent 37.7850 14.6096 2.0000 72.0000 70.0000
- 3 7 15941 16262.0 Left-Cerebellum-White-Matter 80.1634 8.4195 28.0000 115.0000 87.0000
- 4 8 60092 60354.9 Left-Cerebellum-Cortex 54.1132 11.1811 3.0000 103.0000 100.0000
- 5 10 7296 7035.1 Left-Thalamus-Proper 79.6198 11.3337 26.0000 107.0000 81.0000
- 6 11 4624 4616.3 Left-Caudate 69.0056 8.9527 32.0000 98.0000 66.0000
- 7 12 5782 5775.6 Left-Putamen 75.8916 7.2112 23.0000 108.0000 85.0000
- 8 13 2342 2297.0 Left-Pallidum 93.6759 5.6045 68.0000 112.0000 44.0000
- 9 14 1064 1128.1 3rd-Ventricle 28.2011 13.9420 2.0000 64.0000 62.0000
- 10 15 1690 1805.4 4th-Ventricle 22.7325 12.1196 0.0000 73.0000 73.0000
- 11 16 22766 22864.8 Brain-Stem 77.5204 9.5619 17.0000 114.0000 97.0000
- 12 17 4208 4025.0 Left-Hippocampus 57.2562 9.7652 13.0000 96.0000 83.0000
- 13 18 1514 1439.9 Left-Amygdala 59.6268 8.0578 29.0000 88.0000 59.0000
- 14 24 1166 1160.1 CSF 34.5034 14.4687 1.0000 78.0000 77.0000
- 15 26 728 719.7 Left-Accumbens-area 65.2720 5.9766 37.0000 84.0000 47.0000
- 16 28 4481 4336.3 Left-VentralDC 85.6978 11.9945 21.0000 117.0000 96.0000
- 17 30 40 53.7 Left-vessel 49.7500 13.8522 16.0000 84.0000 68.0000
- 18 31 608 541.0 Left-choroid-plexus 47.1760 13.8276 14.0000 84.0000 70.0000
- 19 43 5114 5386.0 Right-Lateral-Ventricle 23.5501 14.8207 0.0000 85.0000 85.0000
- 20 44 223 285.0 Right-Inf-Lat-Vent 40.7713 11.3243 10.0000 75.0000 65.0000
- 21 46 14397 14921.9 Right-Cerebellum-White-Matter 79.1250 6.8416 23.0000 100.0000 77.0000
- 22 47 60884 60939.9 Right-Cerebellum-Cortex 55.3813 10.5450 0.0000 100.0000 100.0000
- 23 49 7498 7225.5 Right-Thalamus-Proper 80.0476 11.0188 20.0000 109.0000 89.0000
- 24 50 4827 4757.7 Right-Caudate 67.7394 9.2170 34.0000 97.0000 63.0000
- 25 51 6251 6125.5 Right-Putamen 75.5817 7.9397 23.0000 104.0000 81.0000
- 26 52 2151 2084.8 Right-Pallidum 93.2789 5.7368 73.0000 115.0000 42.0000
- 27 53 4354 4195.1 Right-Hippocampus 59.6647 9.5261 11.0000 105.0000 94.0000
- 28 54 1702 1653.7 Right-Amygdala 58.7879 7.9085 10.0000 92.0000 82.0000
- 29 58 768 734.3 Right-Accumbens-area 65.0964 6.7113 41.0000 90.0000 49.0000
- 30 60 4516 4337.4 Right-VentralDC 85.1132 12.6533 23.0000 121.0000 98.0000
- 31 62 17 25.1 Right-vessel 47.1765 12.6008 30.0000 70.0000 40.0000
- 32 63 662 609.6 Right-choroid-plexus 51.0937 13.7167 16.0000 84.0000 68.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 974 862.3 WM-hypointensities 69.2618 11.8359 27.0000 106.0000 79.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 193 199.1 Optic-Chiasm 76.0984 18.8885 24.0000 116.0000 92.0000
- 41 251 805 764.5 CC_Posterior 101.5764 13.9548 44.0000 124.0000 80.0000
- 42 252 503 457.1 CC_Mid_Posterior 93.4732 19.7531 22.0000 124.0000 102.0000
- 43 253 442 394.5 CC_Central 95.4412 19.4431 19.0000 123.0000 104.0000
- 44 254 407 370.0 CC_Mid_Anterior 99.4545 17.1614 41.0000 121.0000 80.0000
- 45 255 932 882.0 CC_Anterior 104.6588 16.3512 30.0000 132.0000 102.0000
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