wmparc.stats 11 KB

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  1. # Title Segmentation Statistics
  2. #
  3. # generating_program mri_segstats
  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051142 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
  6. # sysname Linux
  7. # hostname tars-904
  8. # machine x86_64
  9. # user ntraut
  10. # anatomy_type volume
  11. #
  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
  13. # subjectname 0051142
  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 23564.000000, mm^3
  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 260858.379330, mm^3
  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 258110.179574, mm^3
  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 518968.558904, mm^3
  18. # Measure Mask, MaskVol, Mask Volume, 1944131.000000, mm^3
  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1869450.792645, mm^3
  20. # SegVolFile mri/wmparc.mgz
  21. # SegVolFileTimeStamp 2017/10/08 05:48:51
  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt
  23. # ColorTableTimeStamp 2017/01/18 23:00:02
  24. # InVolFile mri/norm.mgz
  25. # InVolFileTimeStamp 2017/10/07 20:53:19
  26. # InVolFrame 0
  27. # PVVolFile mri/norm.mgz
  28. # PVVolFileTimeStamp 2017/10/07 20:53:19
  29. # ExcludeSegId 0
  30. # Only reporting non-empty segmentations
  31. # VoxelVolume_mm3 1
  32. # TableCol 1 ColHeader Index
  33. # TableCol 1 FieldName Index
  34. # TableCol 1 Units NA
  35. # TableCol 2 ColHeader SegId
  36. # TableCol 2 FieldName Segmentation Id
  37. # TableCol 2 Units NA
  38. # TableCol 3 ColHeader NVoxels
  39. # TableCol 3 FieldName Number of Voxels
  40. # TableCol 3 Units unitless
  41. # TableCol 4 ColHeader Volume_mm3
  42. # TableCol 4 FieldName Volume
  43. # TableCol 4 Units mm^3
  44. # TableCol 5 ColHeader StructName
  45. # TableCol 5 FieldName Structure Name
  46. # TableCol 5 Units NA
  47. # TableCol 6 ColHeader normMean
  48. # TableCol 6 FieldName Intensity normMean
  49. # TableCol 6 Units MR
  50. # TableCol 7 ColHeader normStdDev
  51. # TableCol 7 FieldName Itensity normStdDev
  52. # TableCol 7 Units MR
  53. # TableCol 8 ColHeader normMin
  54. # TableCol 8 FieldName Intensity normMin
  55. # TableCol 8 Units MR
  56. # TableCol 9 ColHeader normMax
  57. # TableCol 9 FieldName Intensity normMax
  58. # TableCol 9 Units MR
  59. # TableCol 10 ColHeader normRange
  60. # TableCol 10 FieldName Intensity normRange
  61. # TableCol 10 Units MR
  62. # NRows 70
  63. # NTableCols 10
  64. # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
  65. 1 3001 3679 3740.4 wm-lh-bankssts 101.8554 5.6200 81.0000 118.0000 37.0000
  66. 2 3002 3420 3399.2 wm-lh-caudalanteriorcingulate 103.4670 6.9009 55.0000 116.0000 61.0000
  67. 3 3003 6887 6945.6 wm-lh-caudalmiddlefrontal 98.5791 6.4839 74.0000 112.0000 38.0000
  68. 4 3005 2815 2861.1 wm-lh-cuneus 92.8952 7.5704 71.0000 108.0000 37.0000
  69. 5 3006 614 657.9 wm-lh-entorhinal 84.4593 6.9911 62.0000 107.0000 45.0000
  70. 6 3007 7472 7367.1 wm-lh-fusiform 92.8152 7.0251 47.0000 118.0000 71.0000
  71. 7 3008 10697 10943.5 wm-lh-inferiorparietal 101.8673 6.7920 77.0000 118.0000 41.0000
  72. 8 3009 7365 7549.8 wm-lh-inferiortemporal 94.5422 8.0338 69.0000 129.0000 60.0000
  73. 9 3010 4042 4124.1 wm-lh-isthmuscingulate 100.1197 6.8380 35.0000 115.0000 80.0000
  74. 10 3011 11841 12302.1 wm-lh-lateraloccipital 97.1598 7.0278 55.0000 117.0000 62.0000
  75. 11 3012 7643 7591.9 wm-lh-lateralorbitofrontal 97.5985 7.4787 72.0000 114.0000 42.0000
  76. 12 3013 6661 6769.1 wm-lh-lingual 88.6718 7.5188 38.0000 110.0000 72.0000
  77. 13 3014 4606 4538.5 wm-lh-medialorbitofrontal 96.7803 9.6083 45.0000 124.0000 79.0000
  78. 14 3015 6644 6973.3 wm-lh-middletemporal 95.1142 7.9478 70.0000 117.0000 47.0000
  79. 15 3016 1225 1280.6 wm-lh-parahippocampal 88.6580 6.1038 69.0000 104.0000 35.0000
  80. 16 3017 3975 3984.8 wm-lh-paracentral 97.9326 5.8041 79.0000 113.0000 34.0000
  81. 17 3018 5453 5521.5 wm-lh-parsopercularis 99.9287 6.6708 76.0000 116.0000 40.0000
  82. 18 3019 1190 1218.0 wm-lh-parsorbitalis 96.8185 7.3523 76.0000 114.0000 38.0000
  83. 19 3020 3938 4015.7 wm-lh-parstriangularis 100.6788 6.4023 79.0000 117.0000 38.0000
  84. 20 3021 3999 3711.5 wm-lh-pericalcarine 89.7059 7.4268 51.0000 113.0000 62.0000
  85. 21 3022 7603 7821.9 wm-lh-postcentral 99.2440 7.0261 74.0000 116.0000 42.0000
  86. 22 3023 4944 4895.3 wm-lh-posteriorcingulate 100.6096 6.4007 43.0000 114.0000 71.0000
  87. 23 3024 14468 14706.0 wm-lh-precentral 98.9171 5.8488 75.0000 116.0000 41.0000
  88. 24 3025 10997 11095.4 wm-lh-precuneus 99.1671 6.1478 50.0000 113.0000 63.0000
  89. 25 3026 2941 2848.5 wm-lh-rostralanteriorcingulate 99.4975 10.6806 47.0000 118.0000 71.0000
  90. 26 3027 14568 14676.2 wm-lh-rostralmiddlefrontal 99.4550 7.5097 75.0000 121.0000 46.0000
  91. 27 3028 20124 20401.9 wm-lh-superiorfrontal 98.4650 7.0285 63.0000 113.0000 50.0000
  92. 28 3029 13524 13857.6 wm-lh-superiorparietal 99.4607 6.4237 77.0000 114.0000 37.0000
  93. 29 3030 9270 9609.9 wm-lh-superiortemporal 97.0392 7.3656 72.0000 116.0000 44.0000
  94. 30 3031 10296 10528.7 wm-lh-supramarginal 103.2182 6.8927 79.0000 120.0000 41.0000
  95. 31 3032 244 263.1 wm-lh-frontalpole 95.6352 7.5301 81.0000 114.0000 33.0000
  96. 32 3033 562 585.7 wm-lh-temporalpole 87.1939 6.6582 71.0000 106.0000 35.0000
  97. 33 3034 1004 974.3 wm-lh-transversetemporal 97.2898 6.0816 77.0000 122.0000 45.0000
  98. 34 3035 10999 10747.6 wm-lh-insula 95.0590 7.9631 57.0000 116.0000 59.0000
  99. 35 4001 3100 3109.6 wm-rh-bankssts 100.2894 5.1331 78.0000 111.0000 33.0000
  100. 36 4002 3154 3119.2 wm-rh-caudalanteriorcingulate 101.7717 7.3937 58.0000 116.0000 58.0000
  101. 37 4003 5587 5634.3 wm-rh-caudalmiddlefrontal 98.7539 6.1017 75.0000 110.0000 35.0000
  102. 38 4005 2852 2903.6 wm-rh-cuneus 95.2693 7.5984 75.0000 110.0000 35.0000
  103. 39 4006 630 672.0 wm-rh-entorhinal 86.7206 6.7695 70.0000 102.0000 32.0000
  104. 40 4007 7430 7461.0 wm-rh-fusiform 92.1087 6.8959 60.0000 109.0000 49.0000
  105. 41 4008 13244 13513.7 wm-rh-inferiorparietal 99.2707 7.2298 76.0000 114.0000 38.0000
  106. 42 4009 7008 7235.3 wm-rh-inferiortemporal 93.2638 7.7728 70.0000 111.0000 41.0000
  107. 43 4010 3780 3913.1 wm-rh-isthmuscingulate 101.8206 6.1489 54.0000 118.0000 64.0000
  108. 44 4011 12283 12782.4 wm-rh-lateraloccipital 94.7974 7.0566 71.0000 117.0000 46.0000
  109. 45 4012 7452 7528.4 wm-rh-lateralorbitofrontal 99.6282 7.3392 68.0000 120.0000 52.0000
  110. 46 4013 6403 6540.6 wm-rh-lingual 90.3350 7.2087 42.0000 110.0000 68.0000
  111. 47 4014 3573 3616.1 wm-rh-medialorbitofrontal 99.8970 8.4401 36.0000 119.0000 83.0000
  112. 48 4015 7611 7895.9 wm-rh-middletemporal 94.5480 7.5725 72.0000 114.0000 42.0000
  113. 49 4016 1419 1462.4 wm-rh-parahippocampal 90.1268 6.5227 58.0000 105.0000 47.0000
  114. 50 4017 4320 4317.3 wm-rh-paracentral 98.3965 6.1767 75.0000 113.0000 38.0000
  115. 51 4018 3821 3832.8 wm-rh-parsopercularis 99.4138 7.0834 77.0000 113.0000 36.0000
  116. 52 4019 1379 1385.9 wm-rh-parsorbitalis 97.3242 7.5028 79.0000 112.0000 33.0000
  117. 53 4020 3881 3949.7 wm-rh-parstriangularis 100.4710 6.7330 79.0000 116.0000 37.0000
  118. 54 4021 4024 3797.6 wm-rh-pericalcarine 92.5979 6.7624 54.0000 111.0000 57.0000
  119. 55 4022 8802 9107.1 wm-rh-postcentral 97.0548 6.7000 77.0000 111.0000 34.0000
  120. 56 4023 5027 5034.1 wm-rh-posteriorcingulate 101.1930 6.5584 61.0000 120.0000 59.0000
  121. 57 4024 15433 15623.3 wm-rh-precentral 97.9896 5.7771 75.0000 111.0000 36.0000
  122. 58 4025 10437 10504.1 wm-rh-precuneus 100.6727 6.1992 71.0000 114.0000 43.0000
  123. 59 4026 2200 2148.1 wm-rh-rostralanteriorcingulate 102.0055 8.6052 61.0000 122.0000 61.0000
  124. 60 4027 14982 15120.7 wm-rh-rostralmiddlefrontal 100.1332 7.0485 76.0000 120.0000 44.0000
  125. 61 4028 20593 20709.2 wm-rh-superiorfrontal 98.1061 6.7162 75.0000 114.0000 39.0000
  126. 62 4029 12750 13068.1 wm-rh-superiorparietal 99.4947 6.6829 77.0000 113.0000 36.0000
  127. 63 4030 7462 7748.2 wm-rh-superiortemporal 95.1241 6.7757 72.0000 112.0000 40.0000
  128. 64 4031 9397 9541.7 wm-rh-supramarginal 100.4200 7.0829 76.0000 116.0000 40.0000
  129. 65 4032 254 248.7 wm-rh-frontalpole 97.2205 8.1875 83.0000 118.0000 35.0000
  130. 66 4033 554 546.3 wm-rh-temporalpole 85.1209 6.5549 69.0000 103.0000 34.0000
  131. 67 4034 867 809.3 wm-rh-transversetemporal 96.0265 6.7539 79.0000 108.0000 29.0000
  132. 68 4035 11495 11277.4 wm-rh-insula 93.8405 8.6002 20.0000 117.0000 97.0000
  133. 69 5001 33361 33101.9 Left-UnsegmentedWhiteMatter 99.3236 8.9442 24.0000 119.0000 95.0000
  134. 70 5002 33302 33154.0 Right-UnsegmentedWhiteMatter 99.6294 8.0560 16.0000 119.0000 103.0000