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0051142
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0051142 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-904
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0051142
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 23564.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 260858.379330, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 258110.179574, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 518968.558904, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1944131.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1869450.792645, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2017/10/08 05:48:51 
    22. 

  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/01/18 23:00:02 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2017/10/07 20:53:19 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2017/10/07 20:53:19 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      3679     3740.4  wm-lh-bankssts                   101.8554     5.6200    81.0000   118.0000    37.0000 
    66. 

  66.   2 3002      3420     3399.2  wm-lh-caudalanteriorcingulate    103.4670     6.9009    55.0000   116.0000    61.0000 
    67. 

  67.   3 3003      6887     6945.6  wm-lh-caudalmiddlefrontal         98.5791     6.4839    74.0000   112.0000    38.0000 
    68. 

  68.   4 3005      2815     2861.1  wm-lh-cuneus                      92.8952     7.5704    71.0000   108.0000    37.0000 
    69. 

  69.   5 3006       614      657.9  wm-lh-entorhinal                  84.4593     6.9911    62.0000   107.0000    45.0000 
    70. 

  70.   6 3007      7472     7367.1  wm-lh-fusiform                    92.8152     7.0251    47.0000   118.0000    71.0000 
    71. 

  71.   7 3008     10697    10943.5  wm-lh-inferiorparietal           101.8673     6.7920    77.0000   118.0000    41.0000 
    72. 

  72.   8 3009      7365     7549.8  wm-lh-inferiortemporal            94.5422     8.0338    69.0000   129.0000    60.0000 
    73. 

  73.   9 3010      4042     4124.1  wm-lh-isthmuscingulate           100.1197     6.8380    35.0000   115.0000    80.0000 
    74. 

  74.  10 3011     11841    12302.1  wm-lh-lateraloccipital            97.1598     7.0278    55.0000   117.0000    62.0000 
    75. 

  75.  11 3012      7643     7591.9  wm-lh-lateralorbitofrontal        97.5985     7.4787    72.0000   114.0000    42.0000 
    76. 

  76.  12 3013      6661     6769.1  wm-lh-lingual                     88.6718     7.5188    38.0000   110.0000    72.0000 
    77. 

  77.  13 3014      4606     4538.5  wm-lh-medialorbitofrontal         96.7803     9.6083    45.0000   124.0000    79.0000 
    78. 

  78.  14 3015      6644     6973.3  wm-lh-middletemporal              95.1142     7.9478    70.0000   117.0000    47.0000 
    79. 

  79.  15 3016      1225     1280.6  wm-lh-parahippocampal             88.6580     6.1038    69.0000   104.0000    35.0000 
    80. 

  80.  16 3017      3975     3984.8  wm-lh-paracentral                 97.9326     5.8041    79.0000   113.0000    34.0000 
    81. 

  81.  17 3018      5453     5521.5  wm-lh-parsopercularis             99.9287     6.6708    76.0000   116.0000    40.0000 
    82. 

  82.  18 3019      1190     1218.0  wm-lh-parsorbitalis               96.8185     7.3523    76.0000   114.0000    38.0000 
    83. 

  83.  19 3020      3938     4015.7  wm-lh-parstriangularis           100.6788     6.4023    79.0000   117.0000    38.0000 
    84. 

  84.  20 3021      3999     3711.5  wm-lh-pericalcarine               89.7059     7.4268    51.0000   113.0000    62.0000 
    85. 

  85.  21 3022      7603     7821.9  wm-lh-postcentral                 99.2440     7.0261    74.0000   116.0000    42.0000 
    86. 

  86.  22 3023      4944     4895.3  wm-lh-posteriorcingulate         100.6096     6.4007    43.0000   114.0000    71.0000 
    87. 

  87.  23 3024     14468    14706.0  wm-lh-precentral                  98.9171     5.8488    75.0000   116.0000    41.0000 
    88. 

  88.  24 3025     10997    11095.4  wm-lh-precuneus                   99.1671     6.1478    50.0000   113.0000    63.0000 
    89. 

  89.  25 3026      2941     2848.5  wm-lh-rostralanteriorcingulate    99.4975    10.6806    47.0000   118.0000    71.0000 
    90. 

  90.  26 3027     14568    14676.2  wm-lh-rostralmiddlefrontal        99.4550     7.5097    75.0000   121.0000    46.0000 
    91. 

  91.  27 3028     20124    20401.9  wm-lh-superiorfrontal             98.4650     7.0285    63.0000   113.0000    50.0000 
    92. 

  92.  28 3029     13524    13857.6  wm-lh-superiorparietal            99.4607     6.4237    77.0000   114.0000    37.0000 
    93. 

  93.  29 3030      9270     9609.9  wm-lh-superiortemporal            97.0392     7.3656    72.0000   116.0000    44.0000 
    94. 

  94.  30 3031     10296    10528.7  wm-lh-supramarginal              103.2182     6.8927    79.0000   120.0000    41.0000 
    95. 

  95.  31 3032       244      263.1  wm-lh-frontalpole                 95.6352     7.5301    81.0000   114.0000    33.0000 
    96. 

  96.  32 3033       562      585.7  wm-lh-temporalpole                87.1939     6.6582    71.0000   106.0000    35.0000 
    97. 

  97.  33 3034      1004      974.3  wm-lh-transversetemporal          97.2898     6.0816    77.0000   122.0000    45.0000 
    98. 

  98.  34 3035     10999    10747.6  wm-lh-insula                      95.0590     7.9631    57.0000   116.0000    59.0000 
    99. 

  99.  35 4001      3100     3109.6  wm-rh-bankssts                   100.2894     5.1331    78.0000   111.0000    33.0000 
    100. 

  100.  36 4002      3154     3119.2  wm-rh-caudalanteriorcingulate    101.7717     7.3937    58.0000   116.0000    58.0000 
    101. 

  101.  37 4003      5587     5634.3  wm-rh-caudalmiddlefrontal         98.7539     6.1017    75.0000   110.0000    35.0000 
    102. 

  102.  38 4005      2852     2903.6  wm-rh-cuneus                      95.2693     7.5984    75.0000   110.0000    35.0000 
    103. 

  103.  39 4006       630      672.0  wm-rh-entorhinal                  86.7206     6.7695    70.0000   102.0000    32.0000 
    104. 

  104.  40 4007      7430     7461.0  wm-rh-fusiform                    92.1087     6.8959    60.0000   109.0000    49.0000 
    105. 

  105.  41 4008     13244    13513.7  wm-rh-inferiorparietal            99.2707     7.2298    76.0000   114.0000    38.0000 
    106. 

  106.  42 4009      7008     7235.3  wm-rh-inferiortemporal            93.2638     7.7728    70.0000   111.0000    41.0000 
    107. 

  107.  43 4010      3780     3913.1  wm-rh-isthmuscingulate           101.8206     6.1489    54.0000   118.0000    64.0000 
    108. 

  108.  44 4011     12283    12782.4  wm-rh-lateraloccipital            94.7974     7.0566    71.0000   117.0000    46.0000 
    109. 

  109.  45 4012      7452     7528.4  wm-rh-lateralorbitofrontal        99.6282     7.3392    68.0000   120.0000    52.0000 
    110. 

  110.  46 4013      6403     6540.6  wm-rh-lingual                     90.3350     7.2087    42.0000   110.0000    68.0000 
    111. 

  111.  47 4014      3573     3616.1  wm-rh-medialorbitofrontal         99.8970     8.4401    36.0000   119.0000    83.0000 
    112. 

  112.  48 4015      7611     7895.9  wm-rh-middletemporal              94.5480     7.5725    72.0000   114.0000    42.0000 
    113. 

  113.  49 4016      1419     1462.4  wm-rh-parahippocampal             90.1268     6.5227    58.0000   105.0000    47.0000 
    114. 

  114.  50 4017      4320     4317.3  wm-rh-paracentral                 98.3965     6.1767    75.0000   113.0000    38.0000 
    115. 

  115.  51 4018      3821     3832.8  wm-rh-parsopercularis             99.4138     7.0834    77.0000   113.0000    36.0000 
    116. 

  116.  52 4019      1379     1385.9  wm-rh-parsorbitalis               97.3242     7.5028    79.0000   112.0000    33.0000 
    117. 

  117.  53 4020      3881     3949.7  wm-rh-parstriangularis           100.4710     6.7330    79.0000   116.0000    37.0000 
    118. 

  118.  54 4021      4024     3797.6  wm-rh-pericalcarine               92.5979     6.7624    54.0000   111.0000    57.0000 
    119. 

  119.  55 4022      8802     9107.1  wm-rh-postcentral                 97.0548     6.7000    77.0000   111.0000    34.0000 
    120. 

  120.  56 4023      5027     5034.1  wm-rh-posteriorcingulate         101.1930     6.5584    61.0000   120.0000    59.0000 
    121. 

  121.  57 4024     15433    15623.3  wm-rh-precentral                  97.9896     5.7771    75.0000   111.0000    36.0000 
    122. 

  122.  58 4025     10437    10504.1  wm-rh-precuneus                  100.6727     6.1992    71.0000   114.0000    43.0000 
    123. 

  123.  59 4026      2200     2148.1  wm-rh-rostralanteriorcingulate   102.0055     8.6052    61.0000   122.0000    61.0000 
    124. 

  124.  60 4027     14982    15120.7  wm-rh-rostralmiddlefrontal       100.1332     7.0485    76.0000   120.0000    44.0000 
    125. 

  125.  61 4028     20593    20709.2  wm-rh-superiorfrontal             98.1061     6.7162    75.0000   114.0000    39.0000 
    126. 

  126.  62 4029     12750    13068.1  wm-rh-superiorparietal            99.4947     6.6829    77.0000   113.0000    36.0000 
    127. 

  127.  63 4030      7462     7748.2  wm-rh-superiortemporal            95.1241     6.7757    72.0000   112.0000    40.0000 
    128. 

  128.  64 4031      9397     9541.7  wm-rh-supramarginal              100.4200     7.0829    76.0000   116.0000    40.0000 
    129. 

  129.  65 4032       254      248.7  wm-rh-frontalpole                 97.2205     8.1875    83.0000   118.0000    35.0000 
    130. 

  130.  66 4033       554      546.3  wm-rh-temporalpole                85.1209     6.5549    69.0000   103.0000    34.0000 
    131. 

  131.  67 4034       867      809.3  wm-rh-transversetemporal          96.0265     6.7539    79.0000   108.0000    29.0000 
    132. 

  132.  68 4035     11495    11277.4  wm-rh-insula                      93.8405     8.6002    20.0000   117.0000    97.0000 
    133. 

  133.  69 5001     33361    33101.9  Left-UnsegmentedWhiteMatter       99.3236     8.9442    24.0000   119.0000    95.0000 
    134. 

  134.  70 5002     33302    33154.0  Right-UnsegmentedWhiteMatter      99.6294     8.0560    16.0000   119.0000   103.0000 
    135.