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reference-preprocessing
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ABIDE_fs-6.0.0
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ABIDE_fs-6.0.0
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0050756
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050756 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname tars-551
    8. 

  8. # machine  x86_64
    9. 

  9. # user     ntraut
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
    13. 

  13. # subjectname 0050756
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1340009.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1311697.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1311534.854526, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 24057.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 288887.905980, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 286296.649059, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 575184.555039, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 258421.085665, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 256037.213822, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 514458.299488, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 64346.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 766027.555039, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1180119.854526, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1156062.854526, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1154003.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1841154.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.757772, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.041168, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 29, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 22, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 51, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1768354.456596, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2017/10/08 02:01:27 
    38. 

  38. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/01/18 23:00:02 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2017/10/07 17:23:15 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2017/10/07 17:23:15 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      9456     9757.7  Left-Lateral-Ventricle            17.8196    14.3378     0.0000    83.0000    83.0000 
    82. 

  82.   2   5       628      682.7  Left-Inf-Lat-Vent                 34.8710    15.1917     5.0000    77.0000    72.0000 
    83. 

  83.   3   7     16093    16643.9  Left-Cerebellum-White-Matter      80.9455     8.3522    19.0000   106.0000    87.0000 
    84. 

  84.   4   8     63507    63587.0  Left-Cerebellum-Cortex            48.8347    10.3853     6.0000   102.0000    96.0000 
    85. 

  85.   5  10      8248     7911.0  Left-Thalamus-Proper              79.2128    10.6029    29.0000   105.0000    76.0000 
    86. 

  86.   6  11      4280     4218.6  Left-Caudate                      64.3946     9.1885    32.0000    94.0000    62.0000 
    87. 

  87.   7  12      5523     5565.1  Left-Putamen                      73.0011     6.7682    38.0000   101.0000    63.0000 
    88. 

  88.   8  13      2233     2033.0  Left-Pallidum                     88.7855     7.1764    47.0000   106.0000    59.0000 
    89. 

  89.   9  14      1427     1474.2  3rd-Ventricle                     22.1528    15.0737     1.0000    73.0000    72.0000 
    90. 

  90.  10  15      1824     1961.7  4th-Ventricle                     19.6727    12.1561     2.0000    65.0000    63.0000 
    91. 

  91.  11  16     22593    22838.3  Brain-Stem                        79.3428    10.6141    14.0000   125.0000   111.0000 
    92. 

  92.  12  17      4319     4136.8  Left-Hippocampus                  56.9692    10.4829    20.0000   106.0000    86.0000 
    93. 

  93.  13  18      2398     2340.9  Left-Amygdala                     57.8799     7.2715    28.0000    83.0000    55.0000 
    94. 

  94.  14  24      1004     1012.6  CSF                               31.4452    13.6009     3.0000    65.0000    62.0000 
    95. 

  95.  15  26       713      700.3  Left-Accumbens-area               62.3156     7.4636    29.0000    86.0000    57.0000 
    96. 

  96.  16  28      4407     4296.4  Left-VentralDC                    87.1727    12.4884    20.0000   122.0000   102.0000 
    97. 

  97.  17  30        12       23.2  Left-vessel                       52.5000     4.8148    46.0000    61.0000    15.0000 
    98. 

  98.  18  31       431      336.5  Left-choroid-plexus               44.7958    16.2821    17.0000    83.0000    66.0000 
    99. 

  99.  19  43     12356    12722.3  Right-Lateral-Ventricle           12.4374    12.2544     0.0000    88.0000    88.0000 
    100. 

  100.  20  44       488      563.1  Right-Inf-Lat-Vent                32.8156    13.4260     4.0000    70.0000    66.0000 
    101. 

  101.  21  46     14931    15435.4  Right-Cerebellum-White-Matter     80.4887     8.2045    31.0000   111.0000    80.0000 
    102. 

  102.  22  47     62333    62454.1  Right-Cerebellum-Cortex           47.1796    10.4416     3.0000    94.0000    91.0000 
    103. 

  103.  23  49      8135     7872.2  Right-Thalamus-Proper             78.8034    10.0565    22.0000   108.0000    86.0000 
    104. 

  104.  24  50      4567     4440.6  Right-Caudate                     60.1758    10.0016    20.0000    90.0000    70.0000 
    105. 

  105.  25  51      5778     5719.2  Right-Putamen                     68.2681     7.7059    42.0000    94.0000    52.0000 
    106. 

  106.  26  52      1898     1756.3  Right-Pallidum                    87.4821     6.5030    62.0000   108.0000    46.0000 
    107. 

  107.  27  53      4313     4101.7  Right-Hippocampus                 54.0997    11.2394    12.0000   102.0000    90.0000 
    108. 

  108.  28  54      2068     1958.7  Right-Amygdala                    53.4642    10.2343    19.0000    87.0000    68.0000 
    109. 

  109.  29  58       784      738.6  Right-Accumbens-area              57.9962     7.4456    39.0000    87.0000    48.0000 
    110. 

  110.  30  60      4745     4687.1  Right-VentralDC                   86.8190    12.4783    39.0000   115.0000    76.0000 
    111. 

  111.  31  62        13       22.7  Right-vessel                      50.6923     8.0456    35.0000    62.0000    27.0000 
    112. 

  112.  32  63       698      549.5  Right-choroid-plexus              42.2966    14.0897    17.0000    79.0000    62.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      2203     1963.4  WM-hypointensities                68.0245    13.9309    21.0000   107.0000    86.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       181      195.8  Optic-Chiasm                      66.1713    18.1429    18.0000   107.0000    89.0000 
    121. 

  121.  41 251       901      856.5  CC_Posterior                     101.2630    14.8929    36.0000   118.0000    82.0000 
    122. 

  122.  42 252       610      538.6  CC_Mid_Posterior                  90.5623    20.4561    19.0000   116.0000    97.0000 
    123. 

  123.  43 253       467      428.8  CC_Central                        98.0450    17.9373    40.0000   120.0000    80.0000 
    124. 

  124.  44 254       447      408.8  CC_Mid_Anterior                   96.5548    18.2673    41.0000   120.0000    79.0000 
    125. 

  125.  45 255      1217     1141.1  CC_Anterior                       99.2728    19.0254    24.0000   161.0000   137.0000 
    126.