# Title Segmentation Statistics # # generating_program mri_segstats # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt --subject 0050756 # sysname Linux # hostname tars-551 # machine x86_64 # user ntraut # anatomy_type volume # # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0 # subjectname 0050756 # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1340009.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1311697.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1311534.854526, mm^3 # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 24057.000000, mm^3 # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 288887.905980, mm^3 # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 286296.649059, mm^3 # Measure Cortex, CortexVol, Total cortical gray matter volume, 575184.555039, mm^3 # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 258421.085665, mm^3 # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 256037.213822, mm^3 # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 514458.299488, mm^3 # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 64346.000000, mm^3 # Measure TotalGray, TotalGrayVol, Total gray matter volume, 766027.555039, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 1180119.854526, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 1156062.854526, mm^3 # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 1154003.000000, mm^3 # Measure Mask, MaskVol, Mask Volume, 1841154.000000, mm^3 # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.757772, unitless # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.041168, unitless # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 29, unitless # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 22, unitless # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 51, unitless # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1768354.456596, mm^3 # SegVolFile mri/aseg.mgz # SegVolFileTimeStamp 2017/10/08 02:01:27 # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/ASegStatsLUT.txt # ColorTableTimeStamp 2017/01/18 23:00:02 # InVolFile mri/norm.mgz # InVolFileTimeStamp 2017/10/07 17:23:15 # InVolFrame 0 # PVVolFile mri/norm.mgz # PVVolFileTimeStamp 2017/10/07 17:23:15 # Excluding Cortical Gray and White Matter # ExcludeSegId 0 2 3 41 42 # VoxelVolume_mm3 1 # TableCol 1 ColHeader Index # TableCol 1 FieldName Index # TableCol 1 Units NA # TableCol 2 ColHeader SegId # TableCol 2 FieldName Segmentation Id # TableCol 2 Units NA # TableCol 3 ColHeader NVoxels # TableCol 3 FieldName Number of Voxels # TableCol 3 Units unitless # TableCol 4 ColHeader Volume_mm3 # TableCol 4 FieldName Volume # TableCol 4 Units mm^3 # TableCol 5 ColHeader StructName # TableCol 5 FieldName Structure Name # TableCol 5 Units NA # TableCol 6 ColHeader normMean # TableCol 6 FieldName Intensity normMean # TableCol 6 Units MR # TableCol 7 ColHeader normStdDev # TableCol 7 FieldName Itensity normStdDev # TableCol 7 Units MR # TableCol 8 ColHeader normMin # TableCol 8 FieldName Intensity normMin # TableCol 8 Units MR # TableCol 9 ColHeader normMax # TableCol 9 FieldName Intensity normMax # TableCol 9 Units MR # TableCol 10 ColHeader normRange # TableCol 10 FieldName Intensity normRange # TableCol 10 Units MR # NRows 45 # NTableCols 10 # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange 1 4 9456 9757.7 Left-Lateral-Ventricle 17.8196 14.3378 0.0000 83.0000 83.0000 2 5 628 682.7 Left-Inf-Lat-Vent 34.8710 15.1917 5.0000 77.0000 72.0000 3 7 16093 16643.9 Left-Cerebellum-White-Matter 80.9455 8.3522 19.0000 106.0000 87.0000 4 8 63507 63587.0 Left-Cerebellum-Cortex 48.8347 10.3853 6.0000 102.0000 96.0000 5 10 8248 7911.0 Left-Thalamus-Proper 79.2128 10.6029 29.0000 105.0000 76.0000 6 11 4280 4218.6 Left-Caudate 64.3946 9.1885 32.0000 94.0000 62.0000 7 12 5523 5565.1 Left-Putamen 73.0011 6.7682 38.0000 101.0000 63.0000 8 13 2233 2033.0 Left-Pallidum 88.7855 7.1764 47.0000 106.0000 59.0000 9 14 1427 1474.2 3rd-Ventricle 22.1528 15.0737 1.0000 73.0000 72.0000 10 15 1824 1961.7 4th-Ventricle 19.6727 12.1561 2.0000 65.0000 63.0000 11 16 22593 22838.3 Brain-Stem 79.3428 10.6141 14.0000 125.0000 111.0000 12 17 4319 4136.8 Left-Hippocampus 56.9692 10.4829 20.0000 106.0000 86.0000 13 18 2398 2340.9 Left-Amygdala 57.8799 7.2715 28.0000 83.0000 55.0000 14 24 1004 1012.6 CSF 31.4452 13.6009 3.0000 65.0000 62.0000 15 26 713 700.3 Left-Accumbens-area 62.3156 7.4636 29.0000 86.0000 57.0000 16 28 4407 4296.4 Left-VentralDC 87.1727 12.4884 20.0000 122.0000 102.0000 17 30 12 23.2 Left-vessel 52.5000 4.8148 46.0000 61.0000 15.0000 18 31 431 336.5 Left-choroid-plexus 44.7958 16.2821 17.0000 83.0000 66.0000 19 43 12356 12722.3 Right-Lateral-Ventricle 12.4374 12.2544 0.0000 88.0000 88.0000 20 44 488 563.1 Right-Inf-Lat-Vent 32.8156 13.4260 4.0000 70.0000 66.0000 21 46 14931 15435.4 Right-Cerebellum-White-Matter 80.4887 8.2045 31.0000 111.0000 80.0000 22 47 62333 62454.1 Right-Cerebellum-Cortex 47.1796 10.4416 3.0000 94.0000 91.0000 23 49 8135 7872.2 Right-Thalamus-Proper 78.8034 10.0565 22.0000 108.0000 86.0000 24 50 4567 4440.6 Right-Caudate 60.1758 10.0016 20.0000 90.0000 70.0000 25 51 5778 5719.2 Right-Putamen 68.2681 7.7059 42.0000 94.0000 52.0000 26 52 1898 1756.3 Right-Pallidum 87.4821 6.5030 62.0000 108.0000 46.0000 27 53 4313 4101.7 Right-Hippocampus 54.0997 11.2394 12.0000 102.0000 90.0000 28 54 2068 1958.7 Right-Amygdala 53.4642 10.2343 19.0000 87.0000 68.0000 29 58 784 738.6 Right-Accumbens-area 57.9962 7.4456 39.0000 87.0000 48.0000 30 60 4745 4687.1 Right-VentralDC 86.8190 12.4783 39.0000 115.0000 76.0000 31 62 13 22.7 Right-vessel 50.6923 8.0456 35.0000 62.0000 27.0000 32 63 698 549.5 Right-choroid-plexus 42.2966 14.0897 17.0000 79.0000 62.0000 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000 34 77 2203 1963.4 WM-hypointensities 68.0245 13.9309 21.0000 107.0000 86.0000 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000 40 85 181 195.8 Optic-Chiasm 66.1713 18.1429 18.0000 107.0000 89.0000 41 251 901 856.5 CC_Posterior 101.2630 14.8929 36.0000 118.0000 82.0000 42 252 610 538.6 CC_Mid_Posterior 90.5623 20.4561 19.0000 116.0000 97.0000 43 253 467 428.8 CC_Central 98.0450 17.9373 40.0000 120.0000 80.0000 44 254 447 408.8 CC_Mid_Anterior 96.5548 18.2673 41.0000 120.0000 79.0000 45 255 1217 1141.1 CC_Anterior 99.2728 19.0254 24.0000 161.0000 137.0000