wmparc.stats 11 KB

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  1. # Title Segmentation Statistics
  2. #
  3. # generating_program mri_segstats
  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject 0050462 --surf-wm-vol --ctab /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt --etiv
  6. # sysname Linux
  7. # hostname tars-200
  8. # machine x86_64
  9. # user ntraut
  10. # anatomy_type volume
  11. #
  12. # SUBJECTS_DIR /pasteur/projets/policy01/cinq/rto/data/abide/fs-6.0.0
  13. # subjectname 0050462
  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 25902.000000, mm^3
  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 253545.682727, mm^3
  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 253814.589057, mm^3
  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 507360.271784, mm^3
  18. # Measure Mask, MaskVol, Mask Volume, 1807119.000000, mm^3
  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1802205.004966, mm^3
  20. # SegVolFile mri/wmparc.mgz
  21. # SegVolFileTimeStamp 2017/10/08 09:25:19
  22. # ColorTable /pasteur/homes/ntraut/bin/freesurfer-6.0.0/WMParcStatsLUT.txt
  23. # ColorTableTimeStamp 2017/01/18 23:00:02
  24. # InVolFile mri/norm.mgz
  25. # InVolFileTimeStamp 2017/10/08 01:48:44
  26. # InVolFrame 0
  27. # PVVolFile mri/norm.mgz
  28. # PVVolFileTimeStamp 2017/10/08 01:48:44
  29. # ExcludeSegId 0
  30. # Only reporting non-empty segmentations
  31. # VoxelVolume_mm3 1
  32. # TableCol 1 ColHeader Index
  33. # TableCol 1 FieldName Index
  34. # TableCol 1 Units NA
  35. # TableCol 2 ColHeader SegId
  36. # TableCol 2 FieldName Segmentation Id
  37. # TableCol 2 Units NA
  38. # TableCol 3 ColHeader NVoxels
  39. # TableCol 3 FieldName Number of Voxels
  40. # TableCol 3 Units unitless
  41. # TableCol 4 ColHeader Volume_mm3
  42. # TableCol 4 FieldName Volume
  43. # TableCol 4 Units mm^3
  44. # TableCol 5 ColHeader StructName
  45. # TableCol 5 FieldName Structure Name
  46. # TableCol 5 Units NA
  47. # TableCol 6 ColHeader normMean
  48. # TableCol 6 FieldName Intensity normMean
  49. # TableCol 6 Units MR
  50. # TableCol 7 ColHeader normStdDev
  51. # TableCol 7 FieldName Itensity normStdDev
  52. # TableCol 7 Units MR
  53. # TableCol 8 ColHeader normMin
  54. # TableCol 8 FieldName Intensity normMin
  55. # TableCol 8 Units MR
  56. # TableCol 9 ColHeader normMax
  57. # TableCol 9 FieldName Intensity normMax
  58. # TableCol 9 Units MR
  59. # TableCol 10 ColHeader normRange
  60. # TableCol 10 FieldName Intensity normRange
  61. # TableCol 10 Units MR
  62. # NRows 70
  63. # NTableCols 10
  64. # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
  65. 1 3001 2595 2594.7 wm-lh-bankssts 98.1360 7.3387 71.0000 119.0000 48.0000
  66. 2 3002 2903 2934.7 wm-lh-caudalanteriorcingulate 102.9507 7.6688 62.0000 117.0000 55.0000
  67. 3 3003 7989 7967.6 wm-lh-caudalmiddlefrontal 98.5526 7.7845 72.0000 117.0000 45.0000
  68. 4 3005 2256 2266.1 wm-lh-cuneus 92.5368 11.2434 61.0000 115.0000 54.0000
  69. 5 3006 1189 1240.8 wm-lh-entorhinal 84.7527 10.2889 59.0000 107.0000 48.0000
  70. 6 3007 6609 6635.0 wm-lh-fusiform 92.6502 9.2412 48.0000 117.0000 69.0000
  71. 7 3008 8385 8504.5 wm-lh-inferiorparietal 99.9451 8.6215 72.0000 118.0000 46.0000
  72. 8 3009 7422 7470.6 wm-lh-inferiortemporal 90.8281 9.9423 61.0000 115.0000 54.0000
  73. 9 3010 4771 4848.2 wm-lh-isthmuscingulate 101.6825 10.4463 24.0000 121.0000 97.0000
  74. 10 3011 9272 9501.3 wm-lh-lateraloccipital 93.3181 10.0234 62.0000 115.0000 53.0000
  75. 11 3012 7284 7222.8 wm-lh-lateralorbitofrontal 96.8055 9.7462 60.0000 119.0000 59.0000
  76. 12 3013 5186 5267.1 wm-lh-lingual 91.1120 10.5376 49.0000 117.0000 68.0000
  77. 13 3014 4474 4465.9 wm-lh-medialorbitofrontal 94.0456 11.4676 40.0000 119.0000 79.0000
  78. 14 3015 6028 6248.7 wm-lh-middletemporal 95.0126 8.5980 68.0000 117.0000 49.0000
  79. 15 3016 1573 1653.7 wm-lh-parahippocampal 92.0852 7.5396 58.0000 111.0000 53.0000
  80. 16 3017 4396 4398.6 wm-lh-paracentral 95.5189 7.1494 70.0000 110.0000 40.0000
  81. 17 3018 5466 5499.2 wm-lh-parsopercularis 102.5816 8.7605 74.0000 121.0000 47.0000
  82. 18 3019 1022 1032.0 wm-lh-parsorbitalis 93.3845 9.1267 70.0000 114.0000 44.0000
  83. 19 3020 3997 4044.2 wm-lh-parstriangularis 102.4166 8.0748 74.0000 121.0000 47.0000
  84. 20 3021 3231 3084.4 wm-lh-pericalcarine 92.6682 10.5396 63.0000 118.0000 55.0000
  85. 21 3022 8030 8263.1 wm-lh-postcentral 95.9274 9.1755 71.0000 120.0000 49.0000
  86. 22 3023 5533 5564.2 wm-lh-posteriorcingulate 100.5588 8.7809 41.0000 119.0000 78.0000
  87. 23 3024 14120 14316.1 wm-lh-precentral 97.4623 7.9824 68.0000 119.0000 51.0000
  88. 24 3025 9286 9389.8 wm-lh-precuneus 99.6976 8.6799 24.0000 119.0000 95.0000
  89. 25 3026 2992 2917.9 wm-lh-rostralanteriorcingulate 98.0013 12.5884 31.0000 140.0000 109.0000
  90. 26 3027 14970 15036.7 wm-lh-rostralmiddlefrontal 98.4193 9.2794 63.0000 120.0000 57.0000
  91. 27 3028 20741 20912.9 wm-lh-superiorfrontal 93.7589 8.9986 64.0000 115.0000 51.0000
  92. 28 3029 11522 11732.9 wm-lh-superiorparietal 99.4048 8.0120 71.0000 119.0000 48.0000
  93. 29 3030 8310 8624.2 wm-lh-superiortemporal 96.9051 8.6202 64.0000 120.0000 56.0000
  94. 30 3031 9694 9846.3 wm-lh-supramarginal 99.3035 8.7965 70.0000 118.0000 48.0000
  95. 31 3032 284 283.7 wm-lh-frontalpole 91.4225 8.8588 72.0000 109.0000 37.0000
  96. 32 3033 593 632.4 wm-lh-temporalpole 80.5599 8.8861 60.0000 114.0000 54.0000
  97. 33 3034 689 731.2 wm-lh-transversetemporal 95.6546 5.8272 80.0000 109.0000 29.0000
  98. 34 3035 11761 11649.4 wm-lh-insula 94.0133 10.2991 52.0000 117.0000 65.0000
  99. 35 4001 2981 2979.6 wm-rh-bankssts 102.5830 6.7210 77.0000 116.0000 39.0000
  100. 36 4002 3065 3114.4 wm-rh-caudalanteriorcingulate 101.9794 8.8176 53.0000 123.0000 70.0000
  101. 37 4003 8043 7933.0 wm-rh-caudalmiddlefrontal 94.8134 9.1892 65.0000 114.0000 49.0000
  102. 38 4005 2213 2251.4 wm-rh-cuneus 86.8888 9.6354 57.0000 112.0000 55.0000
  103. 39 4006 805 851.6 wm-rh-entorhinal 81.6435 7.8277 64.0000 100.0000 36.0000
  104. 40 4007 6119 6139.8 wm-rh-fusiform 91.6076 9.1747 41.0000 115.0000 74.0000
  105. 41 4008 11158 11282.9 wm-rh-inferiorparietal 97.3694 9.6106 67.0000 120.0000 53.0000
  106. 42 4009 6693 6773.1 wm-rh-inferiortemporal 91.0003 10.0547 61.0000 112.0000 51.0000
  107. 43 4010 3735 3809.5 wm-rh-isthmuscingulate 101.6929 8.5855 39.0000 117.0000 78.0000
  108. 44 4011 10252 10467.2 wm-rh-lateraloccipital 90.4186 10.7782 58.0000 118.0000 60.0000
  109. 45 4012 7130 7110.2 wm-rh-lateralorbitofrontal 96.6877 10.7950 60.0000 120.0000 60.0000
  110. 46 4013 5979 5985.6 wm-rh-lingual 88.9967 10.9506 23.0000 118.0000 95.0000
  111. 47 4014 4354 4393.4 wm-rh-medialorbitofrontal 96.3822 13.3960 31.0000 119.0000 88.0000
  112. 48 4015 7050 7292.5 wm-rh-middletemporal 93.9630 10.5745 64.0000 118.0000 54.0000
  113. 49 4016 1680 1762.9 wm-rh-parahippocampal 90.9940 7.3267 60.0000 109.0000 49.0000
  114. 50 4017 4400 4412.0 wm-rh-paracentral 94.7839 7.2891 68.0000 111.0000 43.0000
  115. 51 4018 3803 3785.1 wm-rh-parsopercularis 94.6374 9.7607 66.0000 114.0000 48.0000
  116. 52 4019 1238 1243.7 wm-rh-parsorbitalis 93.6405 9.4823 69.0000 119.0000 50.0000
  117. 53 4020 3273 3291.4 wm-rh-parstriangularis 97.4522 8.7122 69.0000 115.0000 46.0000
  118. 54 4021 3338 3129.0 wm-rh-pericalcarine 86.0815 9.7529 59.0000 112.0000 53.0000
  119. 55 4022 7941 8194.8 wm-rh-postcentral 95.3933 8.3000 72.0000 116.0000 44.0000
  120. 56 4023 4330 4305.0 wm-rh-posteriorcingulate 99.8432 8.0816 49.0000 121.0000 72.0000
  121. 57 4024 15072 15110.2 wm-rh-precentral 95.8731 7.7236 67.0000 115.0000 48.0000
  122. 58 4025 11981 11931.6 wm-rh-precuneus 97.7485 8.6489 24.0000 118.0000 94.0000
  123. 59 4026 2056 1995.3 wm-rh-rostralanteriorcingulate 98.7806 11.1704 64.0000 122.0000 58.0000
  124. 60 4027 14103 14417.9 wm-rh-rostralmiddlefrontal 99.2131 9.1036 65.0000 119.0000 54.0000
  125. 61 4028 21415 21490.7 wm-rh-superiorfrontal 94.6006 9.3239 62.0000 120.0000 58.0000
  126. 62 4029 12152 12359.9 wm-rh-superiorparietal 95.5093 9.1224 67.0000 119.0000 52.0000
  127. 63 4030 7147 7421.3 wm-rh-superiortemporal 93.1883 10.1721 62.0000 120.0000 58.0000
  128. 64 4031 8825 8933.3 wm-rh-supramarginal 101.9073 8.6032 75.0000 122.0000 47.0000
  129. 65 4032 444 477.8 wm-rh-frontalpole 99.2297 8.1005 78.0000 116.0000 38.0000
  130. 66 4033 602 610.0 wm-rh-temporalpole 79.5731 8.1852 62.0000 102.0000 40.0000
  131. 67 4034 583 562.7 wm-rh-transversetemporal 95.6261 8.0249 75.0000 111.0000 36.0000
  132. 68 4035 11197 11044.7 wm-rh-insula 91.3514 11.4298 28.0000 117.0000 89.0000
  133. 69 5001 37134 37102.0 Left-UnsegmentedWhiteMatter 100.6411 9.7254 19.0000 123.0000 104.0000
  134. 70 5002 37172 37395.9 Right-UnsegmentedWhiteMatter 100.5644 9.7110 12.0000 122.0000 110.0000