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Isaac Racine 6d8b6c0b55 more analyses and project done 1 Minggu lalu
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data b951a7bc2b Added exercises Sonja Gruen 3 minggu lalu
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Exercise 0 - Visualizing Spike Trains.ipynb 6d8b6c0b55 more analyses and project done 1 Minggu lalu
Exercise 1 - Crosscorrelations.ipynb 6d8b6c0b55 more analyses and project done 1 Minggu lalu
Exercise 2 - Unitary Event Analysis.ipynb b951a7bc2b Added exercises Sonja Gruen 3 minggu lalu
Exercise 3 - Higher Order Correlations.ipynb 6d8b6c0b55 more analyses and project done 1 Minggu lalu
README.md b951a7bc2b Added exercises Sonja Gruen 3 minggu lalu
environment.yml b951a7bc2b Added exercises Sonja Gruen 3 minggu lalu
utils.py b951a7bc2b Added exercises Sonja Gruen 3 minggu lalu

README.md

spike_train_analysis

Materials for Spike Train Analysis tutorials

Setting up the environment

An environment.yml file is provided to install all dependencies.

Alternative manual installation:

  • > mamba create --name andani_gruen python=3.11 numpy scipy statsmodels matplotlib tqdm ipykernel
  • > conda activate andani_gruen
  • > pip install neo<0.13.4
  • > pip install elephant==1.1.0
  • > pip install viziphant
  • > python -m ipykernel install --user --name andani_gruen
  • If jupyter-lab is not installed:
    • > conda install jupyterlab
  • If jupyter-lab raises ImportError:
    • > conda install chardet

Running the notebooks

  • Make sure that the kernel "andani_gruen" is used to run the notebook.