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spike_train_analysis

Materials for Spike Train Analysis tutorials

Setting up the environment

An environment.yml file is provided to install all dependencies.

Alternative manual installation:

  • > mamba create --name andani_gruen python=3.11 numpy scipy statsmodels matplotlib tqdm ipykernel
  • > conda activate andani_gruen
  • > pip install neo<0.13.4
  • > pip install elephant==1.1.0
  • > pip install viziphant
  • > python -m ipykernel install --user --name andani_gruen
  • If jupyter-lab is not installed:
    • > conda install jupyterlab
  • If jupyter-lab raises ImportError:
    • > conda install chardet

Running the notebooks

  • Make sure that the kernel "andani_gruen" is used to run the notebook.