# spike_train_analysis
Materials for Spike Train Analysis tutorials

## Setting up the environment
An `environment.yml` file is provided to install all dependencies.

Alternative manual installation:
  - > mamba create --name andani_gruen python=3.11 numpy scipy statsmodels matplotlib tqdm ipykernel
  - > conda activate andani_gruen
  - > pip install neo<0.13.4
  - > pip install elephant==1.1.0
  - > pip install viziphant
  - > python -m ipykernel install --user --name andani_gruen
  - If jupyter-lab is not installed:
    - > conda install jupyterlab
  - If jupyter-lab raises ImportError:
    - > conda install chardet

## Running the notebooks
  - Make sure that the kernel "andani_gruen" is used to run the notebook.