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README.md

Stimulating Modular Cultures

Data repository

This repository contains experimental data, processed analysis results, and rendered movies to accompany the paper.

Citable reference:

@misc{yamamoto_modular_2022,
  title = {Modular Architecture Facilitates Noise-Driven Control of Synchrony in Neuronal Networks},
  author = {Yamamoto, Hideaki and Spitzner, F. Paul and Takemuro, Taiki and Buend{\'i}a, Victor and Morante, Carla and Konno, Tomohiro and Sato, Shigeo and {Hirano-Iwata}, Ayumi and Priesemann, Viola and Mu{\~n}oz, Miguel A. and Zierenberg, Johannes and Soriano, Jordi},
  year = {2022},
  eprint = {2205.10563},
  eprinttype = {arxiv},
  primaryclass = {q-bio},
  institution = {{arXiv}},
  doi = {10.48550/arXiv.2205.10563},
  url = {http://arxiv.org/abs/2205.10563},
  archiveprefix = {arXiv},
}

The source code is available via GitHub: https://github.com/Priesemann-Group/stimulating_modular_cultures

To enable plot scripts using the downloaded data (this repo), extract the zip files and place the /dat/ folder inside the base directory of the GitHub repository.

The following structure is assumed:

stimulating_modular_cultures (code repo)/
├── ana/paper_plots.py
├── ...
└── dat/
    ├── experiments/
    │   ├── processed/ (extracted zip)
    │   └── raw/       (extracted zip)
    │       └── 1b/realization_id (e.g. 210315_A)
    └── simulations/
        ├── lif/
        │   ├── processed/ (extracted zip)
        │   └── raw/       (not provided)
        └── meso/
            ├── processed/ (extracted zip)
            └── raw/       (not provided)
...
datacite.yml
Title Data for 'Modular architecture facilitates noise-driven control of synchrony in neuronal networks'
Authors Yamamoto,Hideaki;Research Institute of Electrical Communication (RIEC), Tohoku University, Sendai, Japan
Spitzner,F. Paul;Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
Takemuro,Taiki;Research Institute of Electrical Communication (RIEC), Tohoku University, Sendai, Japan
Buendía,Victor;Max Planck Institute for Biological Cybernetics, Tübingen, Germany
Murota,Hakuba;Research Institute of Electrical Communication (RIEC), Tohoku University, Sendai, Japan
Morante,Carla;Departament de Física de la Matèria Condensada, Universitat de Barcelona, Barcelona, Spain
Konno,Tomohiro;Graduate School of Pharmaceutical Sciences, Tohoku University, Sendai, Japan
Sato,Shigeo;Research Institute of Electrical Communication (RIEC), Tohoku University, Sendai, Japan
Hirano-Iwata,Ayumi;Research Institute of Electrical Communication (RIEC), Tohoku University, Sendai, Japan
Levina,Anna;Max Planck Institute for Biological Cybernetics, Tübingen, Germany
Priesemann,Viola;Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
Muñoz,Miguel A.;Departamento de Electromagnetismo y Física de la Materia, Universidad de Granada, Granada, Spain
Zierenberg,Johannes;Max Planck Institute for Dynamics and Self-Organization, Göttingen, Germany
Soriano,Jordi;Departament de Física de la Matèria Condensada, Universitat de Barcelona, Barcelona, Spain
Description This is the data repository, containing inferred spikes and preprocessed results.
License Creative Commons Attribution-NonCommercial 4.0 International License (CC-BY-NC 4.0) (http://creativecommons.org/licenses/by-nc/4.0/)
References Citation1 [arXiv:2205.10563] (IsSupplementTo)
Funding
Keywords Neuroscience
in vitro cultures
modularity
optogenetics
spiking neuronal network model
Resource Type Dataset