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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-10 --surf-wm-vol --ctab /opt/freesurfer/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00784
    8. 

  8. # machine  x86_64
    9. 

  9. # user     oesteban
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
    13. 

  13. # subjectname sub-10
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 18026.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 193066.957826, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 190428.103228, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 383495.061054, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1180661.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1177789.072125, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2019/10/16 20:36:50 
    22. 

  22. # ColorTable /opt/freesurfer/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/10/20 18:17:30 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2019/10/16 17:26:08 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2019/10/16 17:26:08 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      3059     3028.9  wm-lh-bankssts                    96.4106     9.5985    65.0000   122.0000    57.0000 
    66. 

  66.   2 3002      2053     2023.2  wm-lh-caudalanteriorcingulate     99.5572     9.1463    66.0000   115.0000    49.0000 
    67. 

  67.   3 3003      5165     5005.6  wm-lh-caudalmiddlefrontal         95.5648    10.4208    63.0000   114.0000    51.0000 
    68. 

  68.   4 3005      2080     2055.6  wm-lh-cuneus                      90.9620    10.0859    66.0000   114.0000    48.0000 
    69. 

  69.   5 3006       880      925.1  wm-lh-entorhinal                  79.0227    11.0687    54.0000   101.0000    47.0000 
    70. 

  70.   6 3007      5602     5578.6  wm-lh-fusiform                    91.2817    11.8996    27.0000   116.0000    89.0000 
    71. 

  71.   7 3008      8833     8739.9  wm-lh-inferiorparietal            93.0317     9.9482    62.0000   117.0000    55.0000 
    72. 

  72.   8 3009      5384     5433.0  wm-lh-inferiortemporal            89.8707    11.6176    57.0000   117.0000    60.0000 
    73. 

  73.   9 3010      3029     3078.1  wm-lh-isthmuscingulate            98.4870    11.3179    33.0000   118.0000    85.0000 
    74. 

  74.  10 3011      9453     9381.0  wm-lh-lateraloccipital            90.5466    10.2069    57.0000   113.0000    56.0000 
    75. 

  75.  11 3012      5592     5508.7  wm-lh-lateralorbitofrontal        93.2078    12.7379    52.0000   117.0000    65.0000 
    76. 

  76.  12 3013      4524     4499.8  wm-lh-lingual                     86.2878    10.8674    31.0000   111.0000    80.0000 
    77. 

  77.  13 3014      2841     2793.1  wm-lh-medialorbitofrontal         90.5625    13.1225    45.0000   113.0000    68.0000 
    78. 

  78.  14 3015      4580     4714.6  wm-lh-middletemporal              90.7987    11.1246    63.0000   120.0000    57.0000 
    79. 

  79.  15 3016      1259     1331.9  wm-lh-parahippocampal             84.7903     8.9997    62.0000   104.0000    42.0000 
    80. 

  80.  16 3017      3545     3475.4  wm-lh-paracentral                 92.6889     9.1102    61.0000   110.0000    49.0000 
    81. 

  81.  17 3018      3034     2989.2  wm-lh-parsopercularis             92.3579    11.7196    64.0000   115.0000    51.0000 
    82. 

  82.  18 3019       761      765.9  wm-lh-parsorbitalis               87.1353    10.7588    65.0000   111.0000    46.0000 
    83. 

  83.  19 3020      2515     2476.5  wm-lh-parstriangularis            94.1471    10.8124    65.0000   114.0000    49.0000 
    84. 

  84.  20 3021      2939     2749.9  wm-lh-pericalcarine               91.1599     9.9179    57.0000   113.0000    56.0000 
    85. 

  85.  21 3022      6559     6566.2  wm-lh-postcentral                 89.5397    10.0592    63.0000   116.0000    53.0000 
    86. 

  86.  22 3023      3643     3570.6  wm-lh-posteriorcingulate          98.0681    10.5909    37.0000   119.0000    82.0000 
    87. 

  87.  23 3024     11339    11231.5  wm-lh-precentral                  92.9158     9.7880    63.0000   117.0000    54.0000 
    88. 

  88.  24 3025      7835     7703.9  wm-lh-precuneus                   94.5940    10.3510    38.0000   112.0000    74.0000 
    89. 

  89.  25 3026      1891     1812.6  wm-lh-rostralanteriorcingulate    95.4976    14.9002    23.0000   117.0000    94.0000 
    90. 

  90.  26 3027      9432     9189.0  wm-lh-rostralmiddlefrontal        93.9984    11.3306    62.0000   115.0000    53.0000 
    91. 

  91.  27 3028     13716    13524.9  wm-lh-superiorfrontal             92.7870    10.6645    63.0000   114.0000    51.0000 
    92. 

  92.  28 3029     11650    11481.7  wm-lh-superiorparietal            92.8195    10.0815    62.0000   114.0000    52.0000 
    93. 

  93.  29 3030      6538     6680.7  wm-lh-superiortemporal            91.8246    10.0627    62.0000   112.0000    50.0000 
    94. 

  94.  30 3031      7259     7214.1  wm-lh-supramarginal               92.7990    11.5219    63.0000   117.0000    54.0000 
    95. 

  95.  31 3032       370      377.8  wm-lh-frontalpole                 93.1000    10.4287    68.0000   113.0000    45.0000 
    96. 

  96.  32 3033       577      601.7  wm-lh-temporalpole                77.6568     9.7666    60.0000   101.0000    41.0000 
    97. 

  97.  33 3034       619      598.8  wm-lh-transversetemporal          89.5509     9.4145    70.0000   111.0000    41.0000 
    98. 

  98.  34 3035      8152     8123.3  wm-lh-insula                      90.7093    13.4015    50.0000   116.0000    66.0000 
    99. 

  99.  35 4001      3055     3006.7  wm-rh-bankssts                    97.1257     9.2502    67.0000   121.0000    54.0000 
    100. 

  100.  36 4002      2145     2097.2  wm-rh-caudalanteriorcingulate     96.0149    12.5622    63.0000   115.0000    52.0000 
    101. 

  101.  37 4003      4458     4363.3  wm-rh-caudalmiddlefrontal         96.6467    10.2849    64.0000   115.0000    51.0000 
    102. 

  102.  38 4005      2628     2537.8  wm-rh-cuneus                      89.4014    10.4615    62.0000   109.0000    47.0000 
    103. 

  103.  39 4006       646      689.0  wm-rh-entorhinal                  77.7771    10.2326    55.0000    99.0000    44.0000 
    104. 

  104.  40 4007      5819     5793.9  wm-rh-fusiform                    92.6797    11.8000    41.0000   119.0000    78.0000 
    105. 

  105.  41 4008      9482     9523.1  wm-rh-inferiorparietal            92.9171     9.4796    64.0000   114.0000    50.0000 
    106. 

  106.  42 4009      5336     5324.1  wm-rh-inferiortemporal            88.7727    12.3839    58.0000   118.0000    60.0000 
    107. 

  107.  43 4010      2791     2819.0  wm-rh-isthmuscingulate            97.4676     9.6387    36.0000   114.0000    78.0000 
    108. 

  108.  44 4011      8301     8359.2  wm-rh-lateraloccipital            91.4230     9.6412    64.0000   114.0000    50.0000 
    109. 

  109.  45 4012      5784     5666.6  wm-rh-lateralorbitofrontal        91.0968    13.1685    43.0000   118.0000    75.0000 
    110. 

  110.  46 4013      4603     4589.0  wm-rh-lingual                     86.9040    11.2255    26.0000   114.0000    88.0000 
    111. 

  111.  47 4014      2910     2875.1  wm-rh-medialorbitofrontal         90.9261    12.4337    50.0000   115.0000    65.0000 
    112. 

  112.  48 4015      5627     5687.5  wm-rh-middletemporal              92.5763    11.0627    60.0000   117.0000    57.0000 
    113. 

  113.  49 4016      1231     1273.6  wm-rh-parahippocampal             85.6328     9.6187    37.0000   111.0000    74.0000 
    114. 

  114.  50 4017      3390     3274.2  wm-rh-paracentral                 92.6268     9.9388    62.0000   112.0000    50.0000 
    115. 

  115.  51 4018      2455     2418.1  wm-rh-parsopercularis             94.7185    11.2937    64.0000   113.0000    49.0000 
    116. 

  116.  52 4019      1014     1013.1  wm-rh-parsorbitalis               85.2722    10.2701    62.0000   107.0000    45.0000 
    117. 

  117.  53 4020      2623     2582.9  wm-rh-parstriangularis            93.8631    10.8279    66.0000   114.0000    48.0000 
    118. 

  118.  54 4021      2776     2554.9  wm-rh-pericalcarine               84.9294    12.9797    10.0000   108.0000    98.0000 
    119. 

  119.  55 4022      6869     6812.6  wm-rh-postcentral                 90.3974    10.6549    61.0000   120.0000    59.0000 
    120. 

  120.  56 4023      3585     3500.8  wm-rh-posteriorcingulate          96.2393    11.3698    38.0000   122.0000    84.0000 
    121. 

  121.  57 4024     11929    11818.6  wm-rh-precentral                  94.2472     9.7305    64.0000   116.0000    52.0000 
    122. 

  122.  58 4025      8190     8039.1  wm-rh-precuneus                   94.6438    10.0249    62.0000   112.0000    50.0000 
    123. 

  123.  59 4026      1524     1463.9  wm-rh-rostralanteriorcingulate    96.1030    12.9556    51.0000   119.0000    68.0000 
    124. 

  124.  60 4027      9955     9686.3  wm-rh-rostralmiddlefrontal        93.4032    11.7598    58.0000   116.0000    58.0000 
    125. 

  125.  61 4028     12179    11981.6  wm-rh-superiorfrontal             92.3335    10.7994    62.0000   113.0000    51.0000 
    126. 

  126.  62 4029     10382    10313.0  wm-rh-superiorparietal            92.2651    10.0191    61.0000   112.0000    51.0000 
    127. 

  127.  63 4030      4905     5110.4  wm-rh-superiortemporal            90.9633    11.4157    60.0000   116.0000    56.0000 
    128. 

  128.  64 4031      7362     7313.5  wm-rh-supramarginal               95.3151    11.1962    62.0000   116.0000    54.0000 
    129. 

  129.  65 4032       369      381.1  wm-rh-frontalpole                 92.2222    10.4442    68.0000   113.0000    45.0000 
    130. 

  130.  66 4033       680      687.5  wm-rh-temporalpole                74.5324     9.1595    55.0000    96.0000    41.0000 
    131. 

  131.  67 4034       441      419.5  wm-rh-transversetemporal          91.5714     7.9613    70.0000   110.0000    40.0000 
    132. 

  132.  68 4035      7977     7927.2  wm-rh-insula                      89.8123    13.2289    55.0000   116.0000    61.0000 
    133. 

  133.  69 5001     24887    25110.6  Left-UnsegmentedWhiteMatter       98.0712    12.8619    16.0000   121.0000   105.0000 
    134. 

  134.  70 5002     25252    25445.9  Right-UnsegmentedWhiteMatter      98.2764    11.9582    12.0000   121.0000   109.0000 
    135.