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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-09 --surf-wm-vol --ctab /opt/freesurfer/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00785
    8. 

  8. # machine  x86_64
    9. 

  9. # user     oesteban
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
    13. 

  13. # subjectname sub-09
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 25285.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 265597.092694, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 263604.968609, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 529202.061302, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1538303.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1580916.660390, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2019/10/16 21:20:51 
    22. 

  22. # ColorTable /opt/freesurfer/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/10/20 18:17:30 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2019/10/16 17:25:15 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2019/10/16 17:25:15 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      3333     3293.7  wm-lh-bankssts                    96.7420     8.7139    66.0000   114.0000    48.0000 
    66. 

  66.   2 3002      3073     3027.2  wm-lh-caudalanteriorcingulate     98.9034     9.6699    56.0000   117.0000    61.0000 
    67. 

  67.   3 3003      8620     8443.8  wm-lh-caudalmiddlefrontal         95.3838     9.5436    63.0000   111.0000    48.0000 
    68. 

  68.   4 3005      3676     3591.7  wm-lh-cuneus                      93.8071    10.6001    64.0000   114.0000    50.0000 
    69. 

  69.   5 3006      1273     1332.6  wm-lh-entorhinal                  74.7918    10.8395    50.0000    98.0000    48.0000 
    70. 

  70.   6 3007      7035     6963.4  wm-lh-fusiform                    89.2395    11.9592    21.0000   111.0000    90.0000 
    71. 

  71.   7 3008     11884    11861.0  wm-lh-inferiorparietal            94.7322     9.6609    65.0000   115.0000    50.0000 
    72. 

  72.   8 3009      8544     8540.2  wm-lh-inferiortemporal            89.1451    11.8415    55.0000   112.0000    57.0000 
    73. 

  73.   9 3010      4412     4425.6  wm-lh-isthmuscingulate            99.9481    11.6850    29.0000   119.0000    90.0000 
    74. 

  74.  10 3011     10850    10881.7  wm-lh-lateraloccipital            93.3325    10.1959    64.0000   119.0000    55.0000 
    75. 

  75.  11 3012      7773     7669.0  wm-lh-lateralorbitofrontal        94.1319    11.4105    52.0000   113.0000    61.0000 
    76. 

  76.  12 3013      6178     6146.6  wm-lh-lingual                     88.8784    11.0746    16.0000   112.0000    96.0000 
    77. 

  77.  13 3014      4375     4253.2  wm-lh-medialorbitofrontal         92.3543    12.7538    45.0000   116.0000    71.0000 
    78. 

  78.  14 3015      6632     6716.0  wm-lh-middletemporal              92.8961    11.3399    62.0000   115.0000    53.0000 
    79. 

  79.  15 3016      1551     1652.2  wm-lh-parahippocampal             82.9497    10.2886    58.0000   108.0000    50.0000 
    80. 

  80.  16 3017      4404     4341.3  wm-lh-paracentral                 93.3928     8.8878    63.0000   109.0000    46.0000 
    81. 

  81.  17 3018      4349     4303.0  wm-lh-parsopercularis             96.0062    10.8754    66.0000   114.0000    48.0000 
    82. 

  82.  18 3019      1191     1201.2  wm-lh-parsorbitalis               90.9631    11.0076    64.0000   111.0000    47.0000 
    83. 

  83.  19 3020      2995     2902.3  wm-lh-parstriangularis            92.1025    10.5918    63.0000   113.0000    50.0000 
    84. 

  84.  20 3021      4156     3919.2  wm-lh-pericalcarine               89.5888    12.4422    17.0000   112.0000    95.0000 
    85. 

  85.  21 3022      8600     8636.9  wm-lh-postcentral                 92.6960    10.2769    62.0000   118.0000    56.0000 
    86. 

  86.  22 3023      4320     4295.0  wm-lh-posteriorcingulate          98.6891    11.1337    34.0000   118.0000    84.0000 
    87. 

  87.  23 3024     13976    13935.4  wm-lh-precentral                  94.7405     9.1253    63.0000   116.0000    53.0000 
    88. 

  88.  24 3025     11689    11461.8  wm-lh-precuneus                   97.1199    10.2230    45.0000   116.0000    71.0000 
    89. 

  89.  25 3026      3051     2936.7  wm-lh-rostralanteriorcingulate    89.8384    17.0787    21.0000   120.0000    99.0000 
    90. 

  90.  26 3027     13950    13691.9  wm-lh-rostralmiddlefrontal        93.1936    10.6474    60.0000   117.0000    57.0000 
    91. 

  91.  27 3028     20372    19978.6  wm-lh-superiorfrontal             91.2157    10.1424    61.0000   116.0000    55.0000 
    92. 

  92.  28 3029     11966    11902.4  wm-lh-superiorparietal            95.0079     9.7756    63.0000   115.0000    52.0000 
    93. 

  93.  29 3030      9406     9490.5  wm-lh-superiortemporal            94.3337    10.3430    61.0000   116.0000    55.0000 
    94. 

  94.  30 3031      8630     8602.4  wm-lh-supramarginal               96.8176    11.0561    64.0000   117.0000    53.0000 
    95. 

  95.  31 3032       345      341.9  wm-lh-frontalpole                 93.2261    11.2222    70.0000   116.0000    46.0000 
    96. 

  96.  32 3033       867      889.6  wm-lh-temporalpole                76.5133    10.8038    53.0000   102.0000    49.0000 
    97. 

  97.  33 3034       942      948.0  wm-lh-transversetemporal          93.6391     8.7209    69.0000   114.0000    45.0000 
    98. 

  98.  34 3035     10560    10530.1  wm-lh-insula                      91.8071    13.1332    47.0000   118.0000    71.0000 
    99. 

  99.  35 4001      3097     3027.4  wm-rh-bankssts                    96.3933     9.0933    63.0000   113.0000    50.0000 
    100. 

  100.  36 4002      2597     2597.6  wm-rh-caudalanteriorcingulate     99.2819    11.0904    57.0000   118.0000    61.0000 
    101. 

  101.  37 4003      6936     6836.8  wm-rh-caudalmiddlefrontal         94.0241     9.4984    65.0000   109.0000    44.0000 
    102. 

  102.  38 4005      3175     3154.1  wm-rh-cuneus                      94.4189    10.3135    64.0000   114.0000    50.0000 
    103. 

  103.  39 4006      1082     1144.0  wm-rh-entorhinal                  75.6507     9.5975    51.0000    93.0000    42.0000 
    104. 

  104.  40 4007      6094     6012.1  wm-rh-fusiform                    87.2926    12.4357    44.0000   115.0000    71.0000 
    105. 

  105.  41 4008     11558    11476.6  wm-rh-inferiorparietal            94.7707     9.9419    61.0000   116.0000    55.0000 
    106. 

  106.  42 4009      8303     8275.0  wm-rh-inferiortemporal            88.0985    12.5138    48.0000   110.0000    62.0000 
    107. 

  107.  43 4010      3615     3639.1  wm-rh-isthmuscingulate           101.4515    10.5903    36.0000   118.0000    82.0000 
    108. 

  108.  44 4011     11759    11772.1  wm-rh-lateraloccipital            92.6615    10.2744    63.0000   115.0000    52.0000 
    109. 

  109.  45 4012      7476     7346.8  wm-rh-lateralorbitofrontal        92.6094    12.4920    51.0000   112.0000    61.0000 
    110. 

  110.  46 4013      6413     6319.1  wm-rh-lingual                     91.6060    11.3728    20.0000   112.0000    92.0000 
    111. 

  111.  47 4014      4405     4316.6  wm-rh-medialorbitofrontal         92.3319    11.4849    44.0000   114.0000    70.0000 
    112. 

  112.  48 4015      6971     7040.0  wm-rh-middletemporal              90.1327    11.5956    54.0000   114.0000    60.0000 
    113. 

  113.  49 4016      1648     1704.9  wm-rh-parahippocampal             85.4539     9.4002    51.0000   104.0000    53.0000 
    114. 

  114.  50 4017      5369     5233.1  wm-rh-paracentral                 93.2736    10.0199    62.0000   114.0000    52.0000 
    115. 

  115.  51 4018      4214     4145.3  wm-rh-parsopercularis             96.8363    10.8238    65.0000   115.0000    50.0000 
    116. 

  116.  52 4019      1383     1395.9  wm-rh-parsorbitalis               89.0253    10.2430    63.0000   107.0000    44.0000 
    117. 

  117.  53 4020      3595     3539.1  wm-rh-parstriangularis            92.4584     9.7339    65.0000   110.0000    45.0000 
    118. 

  118.  54 4021      4221     3929.2  wm-rh-pericalcarine               89.9713    11.0293    35.0000   110.0000    75.0000 
    119. 

  119.  55 4022      8972     9037.1  wm-rh-postcentral                 92.3990    10.0955    63.0000   117.0000    54.0000 
    120. 

  120.  56 4023      4318     4306.4  wm-rh-posteriorcingulate          98.5387    10.8185    22.0000   117.0000    95.0000 
    121. 

  121.  57 4024     15148    15019.8  wm-rh-precentral                  93.6489     9.0001    60.0000   115.0000    55.0000 
    122. 

  122.  58 4025     11276    11037.5  wm-rh-precuneus                   96.6566     9.7126    65.0000   115.0000    50.0000 
    123. 

  123.  59 4026      2461     2393.6  wm-rh-rostralanteriorcingulate    98.4970    11.5897    62.0000   116.0000    54.0000 
    124. 

  124.  60 4027     13621    13416.0  wm-rh-rostralmiddlefrontal        93.5202    10.4258    61.0000   116.0000    55.0000 
    125. 

  125.  61 4028     20503    20092.7  wm-rh-superiorfrontal             91.3095    10.0324    58.0000   115.0000    57.0000 
    126. 

  126.  62 4029     11288    11242.7  wm-rh-superiorparietal            94.5341     9.8942    64.0000   116.0000    52.0000 
    127. 

  127.  63 4030      7570     7766.5  wm-rh-superiortemporal            92.8387    10.6423    58.0000   117.0000    59.0000 
    128. 

  128.  64 4031      9429     9408.2  wm-rh-supramarginal               96.2369    10.8781    65.0000   116.0000    51.0000 
    129. 

  129.  65 4032       561      558.1  wm-rh-frontalpole                 92.1747    10.8043    65.0000   112.0000    47.0000 
    130. 

  130.  66 4033       628      624.9  wm-rh-temporalpole                68.5430    10.1276    47.0000    92.0000    45.0000 
    131. 

  131.  67 4034       873      847.8  wm-rh-transversetemporal          94.0160     9.4488    65.0000   112.0000    47.0000 
    132. 

  132.  68 4035     10248    10112.5  wm-rh-insula                      92.2560    12.9784    34.0000   118.0000    84.0000 
    133. 

  133.  69 5001     40266    40430.8  Left-UnsegmentedWhiteMatter       98.7474    11.4862    15.0000   128.0000   113.0000 
    134. 

  134.  70 5002     39287    39225.3  Right-UnsegmentedWhiteMatter      99.0053    11.6268    14.0000   122.0000   108.0000 
    135.