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freesurfer-6.0.1
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sub-05
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stats
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wmparc.stats

wmparc.stats 11 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/wmparc.mgz --sum stats/wmparc.stats --pv mri/norm.mgz --excludeid 0 --brainmask mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --subject sub-05 --surf-wm-vol --ctab /opt/freesurfer/WMParcStatsLUT.txt --etiv 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00779
    8. 

  8. # machine  x86_64
    9. 

  9. # user     oesteban
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
    13. 

  13. # subjectname sub-05
    14. 

  14. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 33868.000000, mm^3
    15. 

  15. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 267611.401211, mm^3
    16. 

  16. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 264838.478004, mm^3
    17. 

  17. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 532449.879215, mm^3
    18. 

  18. # Measure Mask, MaskVol, Mask Volume, 1666364.000000, mm^3
    19. 

  19. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1726969.647695, mm^3
    20. 

  20. # SegVolFile mri/wmparc.mgz 
    21. 

  21. # SegVolFileTimeStamp  2019/10/16 21:30:09 
    22. 

  22. # ColorTable /opt/freesurfer/WMParcStatsLUT.txt 
    23. 

  23. # ColorTableTimeStamp 2017/10/20 18:17:30 
    24. 

  24. # InVolFile  mri/norm.mgz 
    25. 

  25. # InVolFileTimeStamp  2019/10/16 17:25:40 
    26. 

  26. # InVolFrame 0 
    27. 

  27. # PVVolFile  mri/norm.mgz 
    28. 

  28. # PVVolFileTimeStamp  2019/10/16 17:25:40 
    29. 

  29. # ExcludeSegId 0 
    30. 

  30. # Only reporting non-empty segmentations
    31. 

  31. # VoxelVolume_mm3 1 
    32. 

  32. # TableCol  1 ColHeader Index 
    33. 

  33. # TableCol  1 FieldName Index 
    34. 

  34. # TableCol  1 Units     NA 
    35. 

  35. # TableCol  2 ColHeader SegId 
    36. 

  36. # TableCol  2 FieldName Segmentation Id
    37. 

  37. # TableCol  2 Units     NA
    38. 

  38. # TableCol  3 ColHeader NVoxels 
    39. 

  39. # TableCol  3 FieldName Number of Voxels
    40. 

  40. # TableCol  3 Units     unitless
    41. 

  41. # TableCol  4 ColHeader Volume_mm3
    42. 

  42. # TableCol  4 FieldName Volume
    43. 

  43. # TableCol  4 Units     mm^3
    44. 

  44. # TableCol  5 ColHeader StructName
    45. 

  45. # TableCol  5 FieldName Structure Name
    46. 

  46. # TableCol  5 Units     NA
    47. 

  47. # TableCol  6 ColHeader normMean 
    48. 

  48. # TableCol  6 FieldName Intensity normMean
    49. 

  49. # TableCol  6 Units     MR
    50. 

  50. # TableCol  7 ColHeader normStdDev
    51. 

  51. # TableCol  7 FieldName Itensity normStdDev
    52. 

  52. # TableCol  7 Units     MR
    53. 

  53. # TableCol  8 ColHeader normMin
    54. 

  54. # TableCol  8 FieldName Intensity normMin
    55. 

  55. # TableCol  8 Units     MR
    56. 

  56. # TableCol  9 ColHeader normMax
    57. 

  57. # TableCol  9 FieldName Intensity normMax
    58. 

  58. # TableCol  9 Units     MR
    59. 

  59. # TableCol 10 ColHeader normRange
    60. 

  60. # TableCol 10 FieldName Intensity normRange
    61. 

  61. # TableCol 10 Units     MR
    62. 

  62. # NRows 70 
    63. 

  63. # NTableCols 10 
    64. 

  64. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    65. 

  65.   1 3001      1951     1918.4  wm-lh-bankssts                    96.8985    10.4451    67.0000   115.0000    48.0000 
    66. 

  66.   2 3002      2672     2650.5  wm-lh-caudalanteriorcingulate     99.1119     9.9390    46.0000   116.0000    70.0000 
    67. 

  67.   3 3003      7189     7101.3  wm-lh-caudalmiddlefrontal         95.7973    10.6385    59.0000   117.0000    58.0000 
    68. 

  68.   4 3005      3157     3084.1  wm-lh-cuneus                      92.9569    10.7279    62.0000   115.0000    53.0000 
    69. 

  69.   5 3006      1159     1215.5  wm-lh-entorhinal                  77.1976    10.4717    52.0000   100.0000    48.0000 
    70. 

  70.   6 3007      8018     7847.7  wm-lh-fusiform                    90.6774    11.7245    52.0000   112.0000    60.0000 
    71. 

  71.   7 3008     11436    11440.1  wm-lh-inferiorparietal            95.1101    10.0126    47.0000   113.0000    66.0000 
    72. 

  72.   8 3009      6758     6753.8  wm-lh-inferiortemporal            89.7690    11.9539    56.0000   115.0000    59.0000 
    73. 

  73.   9 3010      5115     5118.6  wm-lh-isthmuscingulate            99.8954    11.0254    37.0000   116.0000    79.0000 
    74. 

  74.  10 3011     13582    13663.1  wm-lh-lateraloccipital            90.6085    10.9316    57.0000   117.0000    60.0000 
    75. 

  75.  11 3012      7456     7388.9  wm-lh-lateralorbitofrontal        93.1424    11.9038    53.0000   114.0000    61.0000 
    76. 

  76.  12 3013      6427     6247.4  wm-lh-lingual                     86.7422    11.0623    23.0000   110.0000    87.0000 
    77. 

  77.  13 3014      3999     3926.6  wm-lh-medialorbitofrontal         87.1938    16.3285    21.0000   122.0000   101.0000 
    78. 

  78.  14 3015      6290     6355.1  wm-lh-middletemporal              94.3742    11.2933    57.0000   116.0000    59.0000 
    79. 

  79.  15 3016      1764     1846.5  wm-lh-parahippocampal             85.0397     8.9890    54.0000   105.0000    51.0000 
    80. 

  80.  16 3017      4223     4195.4  wm-lh-paracentral                 94.8998     8.4289    66.0000   110.0000    44.0000 
    81. 

  81.  17 3018      4471     4393.3  wm-lh-parsopercularis             96.1344    11.6842    64.0000   116.0000    52.0000 
    82. 

  82.  18 3019      1041     1050.2  wm-lh-parsorbitalis               91.0365    10.9521    64.0000   115.0000    51.0000 
    83. 

  83.  19 3020      3096     3051.4  wm-lh-parstriangularis            91.7791    10.3758    63.0000   113.0000    50.0000 
    84. 

  84.  20 3021      5068     4764.9  wm-lh-pericalcarine               90.6251     9.9195    58.0000   113.0000    55.0000 
    85. 

  85.  21 3022      7473     7731.4  wm-lh-postcentral                 92.9868     9.4169    65.0000   116.0000    51.0000 
    86. 

  86.  22 3023      4661     4656.0  wm-lh-posteriorcingulate          99.6218    10.3837    57.0000   119.0000    62.0000 
    87. 

  87.  23 3024     14506    14489.3  wm-lh-precentral                  95.3689     9.1929    64.0000   116.0000    52.0000 
    88. 

  88.  24 3025     10953    10776.0  wm-lh-precuneus                   95.4322    10.2229    43.0000   115.0000    72.0000 
    89. 

  89.  25 3026      3023     2925.6  wm-lh-rostralanteriorcingulate    96.2345    10.9375    43.0000   114.0000    71.0000 
    90. 

  90.  26 3027     15294    15061.7  wm-lh-rostralmiddlefrontal        93.3434    10.8206    60.0000   126.0000    66.0000 
    91. 

  91.  27 3028     17932    17705.4  wm-lh-superiorfrontal             92.2674    10.2557    56.0000   123.0000    67.0000 
    92. 

  92.  28 3029     13564    13508.5  wm-lh-superiorparietal            94.7311     9.6600    65.0000   114.0000    49.0000 
    93. 

  93.  29 3030      9617     9700.9  wm-lh-superiortemporal            95.9693    10.8308    60.0000   120.0000    60.0000 
    94. 

  94.  30 3031      9568     9626.1  wm-lh-supramarginal               97.6710    10.8140    66.0000   121.0000    55.0000 
    95. 

  95.  31 3032       294      292.4  wm-lh-frontalpole                 97.3673    10.7995    74.0000   119.0000    45.0000 
    96. 

  96.  32 3033       786      798.3  wm-lh-temporalpole                75.3003    11.0386    51.0000    99.0000    48.0000 
    97. 

  97.  33 3034       975      989.3  wm-lh-transversetemporal          96.0687     8.5297    74.0000   113.0000    39.0000 
    98. 

  98.  34 3035     10400    10385.4  wm-lh-insula                      91.8697    13.0638    45.0000   123.0000    78.0000 
    99. 

  99.  35 4001      2505     2474.1  wm-rh-bankssts                    96.1912     8.5158    65.0000   110.0000    45.0000 
    100. 

  100.  36 4002      2515     2563.6  wm-rh-caudalanteriorcingulate    100.2151     9.0699    65.0000   115.0000    50.0000 
    101. 

  101.  37 4003      6094     5987.3  wm-rh-caudalmiddlefrontal         95.3200    10.3051    63.0000   116.0000    53.0000 
    102. 

  102.  38 4005      3256     3220.9  wm-rh-cuneus                      93.3882     9.7422    66.0000   114.0000    48.0000 
    103. 

  103.  39 4006       763      821.8  wm-rh-entorhinal                  73.8296     8.9158    51.0000    96.0000    45.0000 
    104. 

  104.  40 4007      7362     7319.8  wm-rh-fusiform                    89.5516    11.8469    49.0000   113.0000    64.0000 
    105. 

  105.  41 4008     12691    12632.0  wm-rh-inferiorparietal            92.5399     9.8059    60.0000   113.0000    53.0000 
    106. 

  106.  42 4009      6260     6304.7  wm-rh-inferiortemporal            88.1185    11.7468    56.0000   113.0000    57.0000 
    107. 

  107.  43 4010      4589     4601.8  wm-rh-isthmuscingulate           100.9403    10.3562    20.0000   119.0000    99.0000 
    108. 

  108.  44 4011     14220    14178.0  wm-rh-lateraloccipital            89.2488    10.6729    53.0000   118.0000    65.0000 
    109. 

  109.  45 4012      8052     7991.4  wm-rh-lateralorbitofrontal        90.8000    12.8146    34.0000   119.0000    85.0000 
    110. 

  110.  46 4013      8157     7996.8  wm-rh-lingual                     88.7194    12.1720     8.0000   115.0000   107.0000 
    111. 

  111.  47 4014      3947     3913.1  wm-rh-medialorbitofrontal         92.2283    12.3063    44.0000   128.0000    84.0000 
    112. 

  112.  48 4015      6225     6360.7  wm-rh-middletemporal              92.3216    11.4123    57.0000   115.0000    58.0000 
    113. 

  113.  49 4016      1875     1965.7  wm-rh-parahippocampal             86.2555     9.8280    29.0000   106.0000    77.0000 
    114. 

  114.  50 4017      5325     5310.8  wm-rh-paracentral                 95.8212     8.2318    66.0000   113.0000    47.0000 
    115. 

  115.  51 4018      3259     3227.7  wm-rh-parsopercularis             95.2044    11.3119    63.0000   115.0000    52.0000 
    116. 

  116.  52 4019      1597     1601.9  wm-rh-parsorbitalis               91.2937    11.5469    62.0000   117.0000    55.0000 
    117. 

  117.  53 4020      4015     4004.0  wm-rh-parstriangularis            91.9041     9.9025    64.0000   115.0000    51.0000 
    118. 

  118.  54 4021      5003     4705.8  wm-rh-pericalcarine               88.9366    10.1760    34.0000   115.0000    81.0000 
    119. 

  119.  55 4022      7482     7770.4  wm-rh-postcentral                 91.2892     9.8252    64.0000   114.0000    50.0000 
    120. 

  120.  56 4023      4833     4842.2  wm-rh-posteriorcingulate         100.6178     9.8117    65.0000   120.0000    55.0000 
    121. 

  121.  57 4024     13279    13292.4  wm-rh-precentral                  94.3242     8.7834    62.0000   116.0000    54.0000 
    122. 

  122.  58 4025      9810     9663.6  wm-rh-precuneus                   95.5972     9.9744    63.0000   116.0000    53.0000 
    123. 

  123.  59 4026      1891     1829.8  wm-rh-rostralanteriorcingulate    94.9900    11.2357    61.0000   110.0000    49.0000 
    124. 

  124.  60 4027     15590    15598.4  wm-rh-rostralmiddlefrontal        94.1555    10.1681    62.0000   126.0000    64.0000 
    125. 

  125.  61 4028     18283    17975.2  wm-rh-superiorfrontal             92.6635    10.0526    61.0000   120.0000    59.0000 
    126. 

  126.  62 4029     12083    12108.4  wm-rh-superiorparietal            94.0459     9.7203    57.0000   113.0000    56.0000 
    127. 

  127.  63 4030      7915     8150.7  wm-rh-superiortemporal            92.9257    10.4598    61.0000   116.0000    55.0000 
    128. 

  128.  64 4031     10643    10534.3  wm-rh-supramarginal               92.8862    11.1256    54.0000   114.0000    60.0000 
    129. 

  129.  65 4032       354      365.2  wm-rh-frontalpole                 97.3023    11.9516    75.0000   129.0000    54.0000 
    130. 

  130.  66 4033       916      930.2  wm-rh-temporalpole                74.8723    11.3591    51.0000    97.0000    46.0000 
    131. 

  131.  67 4034       743      737.8  wm-rh-transversetemporal          97.8035     7.1585    74.0000   110.0000    36.0000 
    132. 

  132.  68 4035     10163    10154.7  wm-rh-insula                      89.6053    13.6296    54.0000   114.0000    60.0000 
    133. 

  133.  69 5001     42850    42730.9  Left-UnsegmentedWhiteMatter       98.2544    11.8679     9.0000   120.0000   111.0000 
    134. 

  134.  70 5002     39753    39676.2  Right-UnsegmentedWhiteMatter      98.5449    10.9479    15.0000   120.0000   105.0000 
    135.