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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-07
- # sysname Linux
- # hostname nid00777
- # machine x86_64
- # user oesteban
- # anatomy_type volume
- #
- # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
- # subjectname sub-07
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1002859.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 990450.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 990577.972696, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9869.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 194947.410341, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 197696.079931, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 392643.490272, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 215982.808984, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 216638.673439, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 432621.482423, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 44848.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 533526.490272, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 881326.972696, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 871457.972696, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 869919.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1264653.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.799254, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.007897, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 10, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 6, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 16, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1254743.811023, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2019/10/16 21:05:42
- # ColorTable /opt/freesurfer/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/10/20 18:17:30
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2019/10/16 17:26:23
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2019/10/16 17:26:23
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 5183 5665.0 Left-Lateral-Ventricle 22.5761 13.2256 2.0000 72.0000 70.0000
- 2 5 639 696.7 Left-Inf-Lat-Vent 30.2723 13.4305 7.0000 81.0000 74.0000
- 3 7 12666 13248.9 Left-Cerebellum-White-Matter 80.4657 7.0017 23.0000 97.0000 74.0000
- 4 8 48491 48883.5 Left-Cerebellum-Cortex 51.4155 9.1966 5.0000 83.0000 78.0000
- 5 10 6436 6141.8 Left-Thalamus-Proper 73.6933 11.2156 25.0000 99.0000 74.0000
- 6 11 2694 2586.7 Left-Caudate 60.1429 10.3819 27.0000 90.0000 63.0000
- 7 12 3758 3544.7 Left-Putamen 72.0631 10.0328 44.0000 96.0000 52.0000
- 8 13 1358 1355.5 Left-Pallidum 95.5538 5.0495 79.0000 108.0000 29.0000
- 9 14 576 642.8 3rd-Ventricle 29.7899 11.5459 10.0000 71.0000 61.0000
- 10 15 1196 1261.8 4th-Ventricle 19.6664 12.1313 3.0000 69.0000 66.0000
- 11 16 20787 21253.2 Brain-Stem 72.2852 9.0317 14.0000 105.0000 91.0000
- 12 17 3755 3602.0 Left-Hippocampus 51.4903 9.6947 13.0000 88.0000 75.0000
- 13 18 1138 1099.8 Left-Amygdala 51.3462 8.0228 24.0000 76.0000 52.0000
- 14 24 768 847.0 CSF 33.7461 12.6247 6.0000 65.0000 59.0000
- 15 26 534 497.0 Left-Accumbens-area 52.8577 7.6672 27.0000 77.0000 50.0000
- 16 28 2946 2767.5 Left-VentralDC 79.8517 11.4218 38.0000 104.0000 66.0000
- 17 30 1 3.8 Left-vessel 54.0000 0.0000 54.0000 54.0000 0.0000
- 18 31 459 372.9 Left-choroid-plexus 47.4684 14.1131 17.0000 83.0000 66.0000
- 19 43 2756 3104.0 Right-Lateral-Ventricle 27.7373 14.4557 3.0000 82.0000 79.0000
- 20 44 304 344.0 Right-Inf-Lat-Vent 30.9375 11.0889 10.0000 68.0000 58.0000
- 21 46 11757 12354.9 Right-Cerebellum-White-Matter 80.8870 6.7497 35.0000 96.0000 61.0000
- 22 47 47149 47410.7 Right-Cerebellum-Cortex 53.4634 9.0098 12.0000 85.0000 73.0000
- 23 49 6339 6019.3 Right-Thalamus-Proper 73.5654 11.0379 24.0000 100.0000 76.0000
- 24 50 2794 2777.9 Right-Caudate 58.6288 9.6183 18.0000 90.0000 72.0000
- 25 51 3555 3415.3 Right-Putamen 72.4993 9.7229 37.0000 93.0000 56.0000
- 26 52 1280 1263.2 Right-Pallidum 98.2359 4.7876 82.0000 111.0000 29.0000
- 27 53 3678 3603.1 Right-Hippocampus 52.2045 9.2430 15.0000 88.0000 73.0000
- 28 54 1183 1136.8 Right-Amygdala 51.2992 8.1267 22.0000 72.0000 50.0000
- 29 58 541 492.3 Right-Accumbens-area 55.2865 7.7742 36.0000 82.0000 46.0000
- 30 60 2905 2748.4 Right-VentralDC 82.3019 11.4729 28.0000 108.0000 80.0000
- 31 62 6 8.0 Right-vessel 58.8333 5.3821 52.0000 68.0000 16.0000
- 32 63 528 485.6 Right-choroid-plexus 50.0095 11.9077 19.0000 76.0000 57.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1194 957.9 WM-hypointensities 65.4414 12.8822 12.0000 96.0000 84.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 76 90.0 Optic-Chiasm 57.8947 16.0770 16.0000 100.0000 84.0000
- 41 251 1033 972.8 CC_Posterior 98.0939 14.9849 35.0000 117.0000 82.0000
- 42 252 716 654.9 CC_Mid_Posterior 94.0629 16.1243 42.0000 121.0000 79.0000
- 43 253 620 563.6 CC_Central 93.5387 18.0967 40.0000 117.0000 77.0000
- 44 254 675 628.9 CC_Mid_Anterior 94.6948 15.7724 32.0000 112.0000 80.0000
- 45 255 595 593.6 CC_Anterior 101.3664 8.5075 60.0000 111.0000 51.0000
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