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ds000114
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freesurfer-6.0.1
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sub-07
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-07 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00777
    8. 

  8. # machine  x86_64
    9. 

  9. # user     oesteban
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
    13. 

  13. # subjectname sub-07
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1002859.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 990450.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 990577.972696, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 9869.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 194947.410341, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 197696.079931, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 392643.490272, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 215982.808984, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 216638.673439, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 432621.482423, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 44848.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 533526.490272, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 881326.972696, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 871457.972696, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 869919.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1264653.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.799254, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.007897, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 10, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 6, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 16, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1254743.811023, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2019/10/16 21:05:42 
    38. 

  38. # ColorTable /opt/freesurfer/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/10/20 18:17:30 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2019/10/16 17:26:23 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2019/10/16 17:26:23 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      5183     5665.0  Left-Lateral-Ventricle            22.5761    13.2256     2.0000    72.0000    70.0000 
    82. 

  82.   2   5       639      696.7  Left-Inf-Lat-Vent                 30.2723    13.4305     7.0000    81.0000    74.0000 
    83. 

  83.   3   7     12666    13248.9  Left-Cerebellum-White-Matter      80.4657     7.0017    23.0000    97.0000    74.0000 
    84. 

  84.   4   8     48491    48883.5  Left-Cerebellum-Cortex            51.4155     9.1966     5.0000    83.0000    78.0000 
    85. 

  85.   5  10      6436     6141.8  Left-Thalamus-Proper              73.6933    11.2156    25.0000    99.0000    74.0000 
    86. 

  86.   6  11      2694     2586.7  Left-Caudate                      60.1429    10.3819    27.0000    90.0000    63.0000 
    87. 

  87.   7  12      3758     3544.7  Left-Putamen                      72.0631    10.0328    44.0000    96.0000    52.0000 
    88. 

  88.   8  13      1358     1355.5  Left-Pallidum                     95.5538     5.0495    79.0000   108.0000    29.0000 
    89. 

  89.   9  14       576      642.8  3rd-Ventricle                     29.7899    11.5459    10.0000    71.0000    61.0000 
    90. 

  90.  10  15      1196     1261.8  4th-Ventricle                     19.6664    12.1313     3.0000    69.0000    66.0000 
    91. 

  91.  11  16     20787    21253.2  Brain-Stem                        72.2852     9.0317    14.0000   105.0000    91.0000 
    92. 

  92.  12  17      3755     3602.0  Left-Hippocampus                  51.4903     9.6947    13.0000    88.0000    75.0000 
    93. 

  93.  13  18      1138     1099.8  Left-Amygdala                     51.3462     8.0228    24.0000    76.0000    52.0000 
    94. 

  94.  14  24       768      847.0  CSF                               33.7461    12.6247     6.0000    65.0000    59.0000 
    95. 

  95.  15  26       534      497.0  Left-Accumbens-area               52.8577     7.6672    27.0000    77.0000    50.0000 
    96. 

  96.  16  28      2946     2767.5  Left-VentralDC                    79.8517    11.4218    38.0000   104.0000    66.0000 
    97. 

  97.  17  30         1        3.8  Left-vessel                       54.0000     0.0000    54.0000    54.0000     0.0000 
    98. 

  98.  18  31       459      372.9  Left-choroid-plexus               47.4684    14.1131    17.0000    83.0000    66.0000 
    99. 

  99.  19  43      2756     3104.0  Right-Lateral-Ventricle           27.7373    14.4557     3.0000    82.0000    79.0000 
    100. 

  100.  20  44       304      344.0  Right-Inf-Lat-Vent                30.9375    11.0889    10.0000    68.0000    58.0000 
    101. 

  101.  21  46     11757    12354.9  Right-Cerebellum-White-Matter     80.8870     6.7497    35.0000    96.0000    61.0000 
    102. 

  102.  22  47     47149    47410.7  Right-Cerebellum-Cortex           53.4634     9.0098    12.0000    85.0000    73.0000 
    103. 

  103.  23  49      6339     6019.3  Right-Thalamus-Proper             73.5654    11.0379    24.0000   100.0000    76.0000 
    104. 

  104.  24  50      2794     2777.9  Right-Caudate                     58.6288     9.6183    18.0000    90.0000    72.0000 
    105. 

  105.  25  51      3555     3415.3  Right-Putamen                     72.4993     9.7229    37.0000    93.0000    56.0000 
    106. 

  106.  26  52      1280     1263.2  Right-Pallidum                    98.2359     4.7876    82.0000   111.0000    29.0000 
    107. 

  107.  27  53      3678     3603.1  Right-Hippocampus                 52.2045     9.2430    15.0000    88.0000    73.0000 
    108. 

  108.  28  54      1183     1136.8  Right-Amygdala                    51.2992     8.1267    22.0000    72.0000    50.0000 
    109. 

  109.  29  58       541      492.3  Right-Accumbens-area              55.2865     7.7742    36.0000    82.0000    46.0000 
    110. 

  110.  30  60      2905     2748.4  Right-VentralDC                   82.3019    11.4729    28.0000   108.0000    80.0000 
    111. 

  111.  31  62         6        8.0  Right-vessel                      58.8333     5.3821    52.0000    68.0000    16.0000 
    112. 

  112.  32  63       528      485.6  Right-choroid-plexus              50.0095    11.9077    19.0000    76.0000    57.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1194      957.9  WM-hypointensities                65.4414    12.8822    12.0000    96.0000    84.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85        76       90.0  Optic-Chiasm                      57.8947    16.0770    16.0000   100.0000    84.0000 
    121. 

  121.  41 251      1033      972.8  CC_Posterior                      98.0939    14.9849    35.0000   117.0000    82.0000 
    122. 

  122.  42 252       716      654.9  CC_Mid_Posterior                  94.0629    16.1243    42.0000   121.0000    79.0000 
    123. 

  123.  43 253       620      563.6  CC_Central                        93.5387    18.0967    40.0000   117.0000    77.0000 
    124. 

  124.  44 254       675      628.9  CC_Mid_Anterior                   94.6948    15.7724    32.0000   112.0000    80.0000 
    125. 

  125.  45 255       595      593.6  CC_Anterior                      101.3664     8.5075    60.0000   111.0000    51.0000 
    126.