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ds000114
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freesurfer-6.0.1
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sub-06
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stats
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aseg.stats

aseg.stats 9.6 KB
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  1. # Title Segmentation Statistics 
    2. 

  2. # 
    3. 

  3. # generating_program mri_segstats
    4. 

  4. # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
    5. 

  5. # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-06 
    6. 

  6. # sysname  Linux
    7. 

  7. # hostname nid00783
    8. 

  8. # machine  x86_64
    9. 

  9. # user     oesteban
    10. 

  10. # anatomy_type volume
    11. 

  11. # 
    12. 

  12. # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
    13. 

  13. # subjectname sub-06
    14. 

  14. # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1125001.000000, mm^3
    15. 

  15. # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1104572.000000, mm^3
    16. 

  16. # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1104326.518919, mm^3
    17. 

  17. # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 16058.000000, mm^3
    18. 

  18. # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 223025.976751, mm^3
    19. 

  19. # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 227044.477589, mm^3
    20. 

  20. # Measure Cortex, CortexVol, Total cortical gray matter volume, 450070.454340, mm^3
    21. 

  21. # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 230797.885012, mm^3
    22. 

  22. # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 231450.179568, mm^3
    23. 

  23. # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 462248.064580, mm^3
    24. 

  24. # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 52168.000000, mm^3
    25. 

  25. # Measure TotalGray, TotalGrayVol, Total gray matter volume, 613019.454340, mm^3
    26. 

  26. # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 982489.518919, mm^3
    27. 

  27. # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 966431.518919, mm^3
    28. 

  28. # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 964684.000000, mm^3
    29. 

  29. # Measure Mask, MaskVol, Mask Volume, 1454513.000000, mm^3
    30. 

  30. # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.753713, unitless
    31. 

  31. # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 0.974475, unitless
    32. 

  32. # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 19, unitless
    33. 

  33. # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 10, unitless
    34. 

  34. # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 29, unitless
    35. 

  35. # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1492612.069815, mm^3
    36. 

  36. # SegVolFile mri/aseg.mgz 
    37. 

  37. # SegVolFileTimeStamp  2019/10/16 21:33:03 
    38. 

  38. # ColorTable /opt/freesurfer/ASegStatsLUT.txt 
    39. 

  39. # ColorTableTimeStamp 2017/10/20 18:17:30 
    40. 

  40. # InVolFile  mri/norm.mgz 
    41. 

  41. # InVolFileTimeStamp  2019/10/16 17:26:10 
    42. 

  42. # InVolFrame 0 
    43. 

  43. # PVVolFile  mri/norm.mgz 
    44. 

  44. # PVVolFileTimeStamp  2019/10/16 17:26:10 
    45. 

  45. # Excluding Cortical Gray and White Matter
    46. 

  46. # ExcludeSegId 0 2 3 41 42 
    47. 

  47. # VoxelVolume_mm3 1 
    48. 

  48. # TableCol  1 ColHeader Index 
    49. 

  49. # TableCol  1 FieldName Index 
    50. 

  50. # TableCol  1 Units     NA 
    51. 

  51. # TableCol  2 ColHeader SegId 
    52. 

  52. # TableCol  2 FieldName Segmentation Id
    53. 

  53. # TableCol  2 Units     NA
    54. 

  54. # TableCol  3 ColHeader NVoxels 
    55. 

  55. # TableCol  3 FieldName Number of Voxels
    56. 

  56. # TableCol  3 Units     unitless
    57. 

  57. # TableCol  4 ColHeader Volume_mm3
    58. 

  58. # TableCol  4 FieldName Volume
    59. 

  59. # TableCol  4 Units     mm^3
    60. 

  60. # TableCol  5 ColHeader StructName
    61. 

  61. # TableCol  5 FieldName Structure Name
    62. 

  62. # TableCol  5 Units     NA
    63. 

  63. # TableCol  6 ColHeader normMean 
    64. 

  64. # TableCol  6 FieldName Intensity normMean
    65. 

  65. # TableCol  6 Units     MR
    66. 

  66. # TableCol  7 ColHeader normStdDev
    67. 

  67. # TableCol  7 FieldName Itensity normStdDev
    68. 

  68. # TableCol  7 Units     MR
    69. 

  69. # TableCol  8 ColHeader normMin
    70. 

  70. # TableCol  8 FieldName Intensity normMin
    71. 

  71. # TableCol  8 Units     MR
    72. 

  72. # TableCol  9 ColHeader normMax
    73. 

  73. # TableCol  9 FieldName Intensity normMax
    74. 

  74. # TableCol  9 Units     MR
    75. 

  75. # TableCol 10 ColHeader normRange
    76. 

  76. # TableCol 10 FieldName Intensity normRange
    77. 

  77. # TableCol 10 Units     MR
    78. 

  78. # NRows 45 
    79. 

  79. # NTableCols 10 
    80. 

  80. # ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
    81. 

  81.   1   4      8456     8796.6  Left-Lateral-Ventricle            15.0417    13.4935     0.0000    81.0000    81.0000 
    82. 

  82.   2   5       468      510.6  Left-Inf-Lat-Vent                 32.9466    13.0211     4.0000    68.0000    64.0000 
    83. 

  83.   3   7     14715    15249.8  Left-Cerebellum-White-Matter      83.7194     8.1670    24.0000   100.0000    76.0000 
    84. 

  84.   4   8     55810    56161.7  Left-Cerebellum-Cortex            49.8667    10.2995     0.0000    87.0000    87.0000 
    85. 

  85.   5  10      6681     6344.0  Left-Thalamus-Proper              76.9930    11.8916    20.0000   111.0000    91.0000 
    86. 

  86.   6  11      3283     3266.2  Left-Caudate                      62.0018     9.6743    26.0000    91.0000    65.0000 
    87. 

  87.   7  12      4212     4067.8  Left-Putamen                      69.6334     9.3211    22.0000   100.0000    78.0000 
    88. 

  88.   8  13      1699     1630.5  Left-Pallidum                     93.6580     5.6664    51.0000   109.0000    58.0000 
    89. 

  89.   9  14      1796     1789.1  3rd-Ventricle                     17.5251    14.5974     0.0000    77.0000    77.0000 
    90. 

  90.  10  15      1508     1648.1  4th-Ventricle                     19.8959    12.7831     3.0000    69.0000    66.0000 
    91. 

  91.  11  16     21445    21864.9  Brain-Stem                        77.4016    10.5882    13.0000   110.0000    97.0000 
    92. 

  92.  12  17      4621     4430.4  Left-Hippocampus                  52.3043     9.4673     7.0000    88.0000    81.0000 
    93. 

  93.  13  18      1387     1338.1  Left-Amygdala                     51.7311     8.4685    13.0000    75.0000    62.0000 
    94. 

  94.  14  24      1067     1083.6  CSF                               25.4986    13.8411     0.0000    62.0000    62.0000 
    95. 

  95.  15  26       559      533.0  Left-Accumbens-area               56.1413     6.8084    26.0000    77.0000    51.0000 
    96. 

  96.  16  28      3775     3679.0  Left-VentralDC                    87.8419    12.4793    29.0000   119.0000    90.0000 
    97. 

  97.  17  30        60       76.4  Left-vessel                       49.8167     9.8437    19.0000    64.0000    45.0000 
    98. 

  98.  18  31       579      487.6  Left-choroid-plexus               46.4024    14.4820    14.0000    80.0000    66.0000 
    99. 

  99.  19  43      5450     5811.6  Right-Lateral-Ventricle           19.0224    14.4785     0.0000    78.0000    78.0000 
    100. 

  100.  20  44       436      460.0  Right-Inf-Lat-Vent                28.2477    13.7389     3.0000    71.0000    68.0000 
    101. 

  101.  21  46     14251    14827.2  Right-Cerebellum-White-Matter     82.9764     7.4256    14.0000   102.0000    88.0000 
    102. 

  102.  22  47     54287    54642.6  Right-Cerebellum-Cortex           51.4986     9.5852     6.0000    86.0000    80.0000 
    103. 

  103.  23  49      6514     6173.1  Right-Thalamus-Proper             75.9926    11.4184    22.0000   102.0000    80.0000 
    104. 

  104.  24  50      3474     3431.7  Right-Caudate                     61.0702     9.9301    22.0000    92.0000    70.0000 
    105. 

  105.  25  51      4205     4085.3  Right-Putamen                     68.8502     9.9028    28.0000    94.0000    66.0000 
    106. 

  106.  26  52      1719     1663.1  Right-Pallidum                    92.5294     5.6953    75.0000   110.0000    35.0000 
    107. 

  107.  27  53      4412     4290.2  Right-Hippocampus                 51.0789    10.4727     9.0000    92.0000    83.0000 
    108. 

  108.  28  54      1328     1248.3  Right-Amygdala                    50.4435     9.3196     9.0000    79.0000    70.0000 
    109. 

  109.  29  58       579      544.4  Right-Accumbens-area              56.5941     7.2010    34.0000    83.0000    49.0000 
    110. 

  110.  30  60      3762     3624.9  Right-VentralDC                   85.7600    12.9568    20.0000   115.0000    95.0000 
    111. 

  111.  31  62        33       42.5  Right-vessel                      51.0000     9.2534    34.0000    69.0000    35.0000 
    112. 

  112.  32  63       669      575.7  Right-choroid-plexus              46.2945    14.2650    10.0000    79.0000    69.0000 
    113. 

  113.  33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
    114. 

  114.  34  77      1618     1393.3  WM-hypointensities                66.4061    12.6197    32.0000   104.0000    72.0000 
    115. 

  115.  35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
    116. 

  116.  36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
    117. 

  117.  37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
    118. 

  118.  38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
    119. 

  119.  39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
    120. 

  120.  40  85       146      179.0  Optic-Chiasm                      57.0411    16.7142     7.0000   106.0000    99.0000 
    121. 

  121.  41 251       786      702.9  CC_Posterior                      95.1959    17.7967    41.0000   121.0000    80.0000 
    122. 

  122.  42 252       444      396.8  CC_Mid_Posterior                  92.6441    20.9861    16.0000   120.0000   104.0000 
    123. 

  123.  43 253       474      431.2  CC_Central                        90.7827    21.6332    14.0000   125.0000   111.0000 
    124. 

  124.  44 254       318      293.9  CC_Mid_Anterior                   92.9937    18.4734    40.0000   116.0000    76.0000 
    125. 

  125.  45 255       730      686.2  CC_Anterior                       97.4356    20.2782    19.0000   121.0000   102.0000 
    126.