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- # Title Segmentation Statistics
- #
- # generating_program mri_segstats
- # cvs_version $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $
- # cmdline mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /opt/freesurfer/ASegStatsLUT.txt --subject sub-06
- # sysname Linux
- # hostname nid00783
- # machine x86_64
- # user oesteban
- # anatomy_type volume
- #
- # SUBJECTS_DIR /corral-repl/utexas/poldracklab/data/OpenNeuro/ds000114/derivatives/freesurfer-6.0.1
- # subjectname sub-06
- # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1125001.000000, mm^3
- # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1104572.000000, mm^3
- # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1104326.518919, mm^3
- # Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 16058.000000, mm^3
- # Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 223025.976751, mm^3
- # Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 227044.477589, mm^3
- # Measure Cortex, CortexVol, Total cortical gray matter volume, 450070.454340, mm^3
- # Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 230797.885012, mm^3
- # Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 231450.179568, mm^3
- # Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 462248.064580, mm^3
- # Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 52168.000000, mm^3
- # Measure TotalGray, TotalGrayVol, Total gray matter volume, 613019.454340, mm^3
- # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 982489.518919, mm^3
- # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 966431.518919, mm^3
- # Measure SupraTentorialNotVentVox, SupraTentorialVolNotVentVox, Supratentorial volume voxel count, 964684.000000, mm^3
- # Measure Mask, MaskVol, Mask Volume, 1454513.000000, mm^3
- # Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.753713, unitless
- # Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 0.974475, unitless
- # Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 19, unitless
- # Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 10, unitless
- # Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 29, unitless
- # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1492612.069815, mm^3
- # SegVolFile mri/aseg.mgz
- # SegVolFileTimeStamp 2019/10/16 21:33:03
- # ColorTable /opt/freesurfer/ASegStatsLUT.txt
- # ColorTableTimeStamp 2017/10/20 18:17:30
- # InVolFile mri/norm.mgz
- # InVolFileTimeStamp 2019/10/16 17:26:10
- # InVolFrame 0
- # PVVolFile mri/norm.mgz
- # PVVolFileTimeStamp 2019/10/16 17:26:10
- # Excluding Cortical Gray and White Matter
- # ExcludeSegId 0 2 3 41 42
- # VoxelVolume_mm3 1
- # TableCol 1 ColHeader Index
- # TableCol 1 FieldName Index
- # TableCol 1 Units NA
- # TableCol 2 ColHeader SegId
- # TableCol 2 FieldName Segmentation Id
- # TableCol 2 Units NA
- # TableCol 3 ColHeader NVoxels
- # TableCol 3 FieldName Number of Voxels
- # TableCol 3 Units unitless
- # TableCol 4 ColHeader Volume_mm3
- # TableCol 4 FieldName Volume
- # TableCol 4 Units mm^3
- # TableCol 5 ColHeader StructName
- # TableCol 5 FieldName Structure Name
- # TableCol 5 Units NA
- # TableCol 6 ColHeader normMean
- # TableCol 6 FieldName Intensity normMean
- # TableCol 6 Units MR
- # TableCol 7 ColHeader normStdDev
- # TableCol 7 FieldName Itensity normStdDev
- # TableCol 7 Units MR
- # TableCol 8 ColHeader normMin
- # TableCol 8 FieldName Intensity normMin
- # TableCol 8 Units MR
- # TableCol 9 ColHeader normMax
- # TableCol 9 FieldName Intensity normMax
- # TableCol 9 Units MR
- # TableCol 10 ColHeader normRange
- # TableCol 10 FieldName Intensity normRange
- # TableCol 10 Units MR
- # NRows 45
- # NTableCols 10
- # ColHeaders Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange
- 1 4 8456 8796.6 Left-Lateral-Ventricle 15.0417 13.4935 0.0000 81.0000 81.0000
- 2 5 468 510.6 Left-Inf-Lat-Vent 32.9466 13.0211 4.0000 68.0000 64.0000
- 3 7 14715 15249.8 Left-Cerebellum-White-Matter 83.7194 8.1670 24.0000 100.0000 76.0000
- 4 8 55810 56161.7 Left-Cerebellum-Cortex 49.8667 10.2995 0.0000 87.0000 87.0000
- 5 10 6681 6344.0 Left-Thalamus-Proper 76.9930 11.8916 20.0000 111.0000 91.0000
- 6 11 3283 3266.2 Left-Caudate 62.0018 9.6743 26.0000 91.0000 65.0000
- 7 12 4212 4067.8 Left-Putamen 69.6334 9.3211 22.0000 100.0000 78.0000
- 8 13 1699 1630.5 Left-Pallidum 93.6580 5.6664 51.0000 109.0000 58.0000
- 9 14 1796 1789.1 3rd-Ventricle 17.5251 14.5974 0.0000 77.0000 77.0000
- 10 15 1508 1648.1 4th-Ventricle 19.8959 12.7831 3.0000 69.0000 66.0000
- 11 16 21445 21864.9 Brain-Stem 77.4016 10.5882 13.0000 110.0000 97.0000
- 12 17 4621 4430.4 Left-Hippocampus 52.3043 9.4673 7.0000 88.0000 81.0000
- 13 18 1387 1338.1 Left-Amygdala 51.7311 8.4685 13.0000 75.0000 62.0000
- 14 24 1067 1083.6 CSF 25.4986 13.8411 0.0000 62.0000 62.0000
- 15 26 559 533.0 Left-Accumbens-area 56.1413 6.8084 26.0000 77.0000 51.0000
- 16 28 3775 3679.0 Left-VentralDC 87.8419 12.4793 29.0000 119.0000 90.0000
- 17 30 60 76.4 Left-vessel 49.8167 9.8437 19.0000 64.0000 45.0000
- 18 31 579 487.6 Left-choroid-plexus 46.4024 14.4820 14.0000 80.0000 66.0000
- 19 43 5450 5811.6 Right-Lateral-Ventricle 19.0224 14.4785 0.0000 78.0000 78.0000
- 20 44 436 460.0 Right-Inf-Lat-Vent 28.2477 13.7389 3.0000 71.0000 68.0000
- 21 46 14251 14827.2 Right-Cerebellum-White-Matter 82.9764 7.4256 14.0000 102.0000 88.0000
- 22 47 54287 54642.6 Right-Cerebellum-Cortex 51.4986 9.5852 6.0000 86.0000 80.0000
- 23 49 6514 6173.1 Right-Thalamus-Proper 75.9926 11.4184 22.0000 102.0000 80.0000
- 24 50 3474 3431.7 Right-Caudate 61.0702 9.9301 22.0000 92.0000 70.0000
- 25 51 4205 4085.3 Right-Putamen 68.8502 9.9028 28.0000 94.0000 66.0000
- 26 52 1719 1663.1 Right-Pallidum 92.5294 5.6953 75.0000 110.0000 35.0000
- 27 53 4412 4290.2 Right-Hippocampus 51.0789 10.4727 9.0000 92.0000 83.0000
- 28 54 1328 1248.3 Right-Amygdala 50.4435 9.3196 9.0000 79.0000 70.0000
- 29 58 579 544.4 Right-Accumbens-area 56.5941 7.2010 34.0000 83.0000 49.0000
- 30 60 3762 3624.9 Right-VentralDC 85.7600 12.9568 20.0000 115.0000 95.0000
- 31 62 33 42.5 Right-vessel 51.0000 9.2534 34.0000 69.0000 35.0000
- 32 63 669 575.7 Right-choroid-plexus 46.2945 14.2650 10.0000 79.0000 69.0000
- 33 72 0 0.0 5th-Ventricle 0.0000 0.0000 0.0000 0.0000 0.0000
- 34 77 1618 1393.3 WM-hypointensities 66.4061 12.6197 32.0000 104.0000 72.0000
- 35 78 0 0.0 Left-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 36 79 0 0.0 Right-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 37 80 0 0.0 non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 38 81 0 0.0 Left-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 39 82 0 0.0 Right-non-WM-hypointensities 0.0000 0.0000 0.0000 0.0000 0.0000
- 40 85 146 179.0 Optic-Chiasm 57.0411 16.7142 7.0000 106.0000 99.0000
- 41 251 786 702.9 CC_Posterior 95.1959 17.7967 41.0000 121.0000 80.0000
- 42 252 444 396.8 CC_Mid_Posterior 92.6441 20.9861 16.0000 120.0000 104.0000
- 43 253 474 431.2 CC_Central 90.7827 21.6332 14.0000 125.0000 111.0000
- 44 254 318 293.9 CC_Mid_Anterior 92.9937 18.4734 40.0000 116.0000 76.0000
- 45 255 730 686.2 CC_Anterior 97.4356 20.2782 19.0000 121.0000 102.0000
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