stress_and_distractibility/code/s0_mvhdf.sh

#!/bin/bash

proj_dir=~/dss/msense/stress_and_distractibility

# get subdirectories from folder proj_dir/rawdata/asd/
sub_dirs=($(ls -d $proj_dir/rawdata/td/sub-*))

# loop through subdirectories
for sub_dir in ${sub_dirs[@]}; do
	# get subject id from subdirectory
	sub_id=$(basename $sub_dir)
	# get the final three letters of the subject id
	sub_id=${sub_id: -3} 

	# create output directory
	new_dir=${proj_dir}/sub-TD${sub_id}
	# if the output directory does not exist, create it
	if [ ! -d $new_dir ]; then
		mkdir -p $new_dir
	fi
	beh_dir=${new_dir}/beh
	if [ ! -d $beh_dir ]; then
		mkdir -p $beh_dir
	fi

	# move the hdf files to the output directory
	mv $sub_dir/*.hdf5 $beh_dir
	#echo $sub_dir
	#echo $beh_dir
	# copy csv files to the output directory
	cp $sub_dir/*csv $beh_dir


done