larger training set

analyses/category_prediction.py

@@ -43,7 +43,7 @@ if __name__ == '__main__':
     parser.add_argument('--min-df', type=int, default=0, help='min_df')
     parser.add_argument('--reuse-stored-vocabulary', default=False, action='store_true')
     parser.add_argument('--threads', type=int, default=4)
-    args = parser.parse_args(["output/category_prediction", "categories", "--values", "Experiment-HEP", "Phenomenology-HEP", "Theory-HEP", "--samples", "60000", "--nouns", "--lemmatize", "--lemmatize-ngrams", "--remove-latex", "--add-title", "--top-unithood", "1000", "--threads", "4"])
+    args = parser.parse_args(["output/category_prediction", "categories", "--values", "Experiment-HEP", "Phenomenology-HEP", "Theory-HEP", "--samples", "110000", "--nouns", "--lemmatize", "--lemmatize-ngrams", "--remove-latex", "--add-title", "--top-unithood", "1000", "--threads", "16"])
 
     with open(opj(args.location, "params.yml"), "w+") as fp:
         yaml.dump(args, fp)
@@ -157,7 +157,7 @@ if __name__ == '__main__':
     cats = cat_classifier.fit_transform(articles["categories"]).tolist()
     articles["cats"] = cats
 
-    training, validation = train_test_split(articles, train_size=0.8333333)
+    training, validation = train_test_split(articles, train_size=100000/110000)
 
     from sklearn.linear_model import LogisticRegression
     from sklearn.dummy import DummyClassifier
@@ -173,7 +173,7 @@ if __name__ == '__main__':
 
     score_vs_vocab_size = []
 
-    for vocab in [50] + list(np.arange(125, 1000+125, 125)):
+    for vocab in [50] + list(np.arange(125, 1000, 125)):
         score = 0
         for i in range(3):
             dummies[i] = DummyClassifier(strategy="most_frequent")
@@ -287,19 +287,6 @@ if __name__ == '__main__':
             "pgf.rcfonts": False,
         }
     )
-    colors = ['#377eb8', '#ff7f00', '#4daf4a']
-
-    for i in range(3):
-        plt.plot(score_vs_vocab_size["vocab"], score_vs_vocab_size[f"acc_{i}"], color=colors[i], label=["Expérience", "Phénoménologie", "Théorie"][i])
-        plt.plot(score_vs_vocab_size["vocab"], [dummies_scores[i]]*len(score_vs_vocab_size["vocab"]), color=colors[i], ls="--")
-
-    plt.xlim(0,500)
-    plt.title("Prédiction des catégories d'un article à partir de son résumé")
-    plt.xlabel("Taille du vocabulaire ($V$)")
-    plt.ylabel("Précision")
-    plt.legend()
-    plt.savefig("plots/categories_bow_prediction.png")
-    plt.savefig("plots/categories_bow_prediction.eps")
 
     cats = {"exp": "Experiment-HEP", "th": "Theory-HEP"}
     cats_friendly = {"th": "Theory", "exp": "Experiment"}
@@ -344,8 +331,8 @@ if __name__ == '__main__':
 
     for cat in ["th", "exp"]:
         table = []
-        top = results[results["Phenomenology-HEP"]>0].sort_values(f"ph_minus_{cat}", ascending=False).head(40).index.values
-        bottom = results[results[cats[cat]]>0].sort_values(f"ph_minus_{cat}", ascending=True).head(40).index.values
+        top = results[results["Phenomenology-HEP"]>0].sort_values(f"ph_minus_{cat}", ascending=False).head(45).index.values
+        bottom = results[results[cats[cat]]>0].sort_values(f"ph_minus_{cat}", ascending=True).head(45).index.values
             
         table.append({
             'Reference category': cats_friendly[cat],

output/category_prediction/params.yml

@@ -13,8 +13,8 @@ nouns: true
 remove_latex: true
 reuse_articles: false
 reuse_stored_vocabulary: false
-samples: 60000
-threads: 4
+samples: 110000
+threads: 16
 top_unithood: 1000
 values:
 - Experiment-HEP

output/category_prediction/results.csv

@@ -1,486 +1,485 @@
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plots/categories_bow_prediction.pdf

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tables/specific_vocabulary.tex

@@ -2,12 +2,12 @@
 \caption{Vocabulary specific to each category. The left column lists expressions that discriminate experiment and theory from phenomenology. The right column lists expressions that are the most specific to phenomenology and foreigh to experiment and theory.}
 \label{table:specific_pheno_vocabulary}\\
 \toprule
-{} &                                                                                                                                                                                                                                                                                                                                                                                                                          Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                                                                                 Vocabulary specific to theory \\
+{} &                                                                                                                                                                                                                                                                                                                                                                                                                                                    Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                                                                    Vocabulary specific to theory \\
 \midrule
 \endfirsthead
 \caption[]{Vocabulary specific to each category. The left column lists expressions that discriminate experiment and theory from phenomenology. The right column lists expressions that are the most specific to phenomenology and foreigh to experiment and theory.} \\
 \toprule
-{} &                                                                                                                                                                                                                                                                                                                                                                                                                          Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                                                                                 Vocabulary specific to theory \\
+{} &                                                                                                                                                                                                                                                                                                                                                                                                                                                    Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                                                                    Vocabulary specific to theory \\
 \midrule
 \endhead
 \midrule
@@ -17,6 +17,6 @@
 
 \bottomrule
 \endlastfoot
-\textbf{Experiment} &  qcd, quark, experimental data, mssm, contribution, high energy, dark matter, gluon, lhc, plasma, implication, factorization, new physic, phenomenology, parton, color, approach, extra dimension, model, inflation, neutrino, process, bound, constraint, effect, correction, integral, evolution, scenario, mixing, numerical result, unification, exchange, estimate, collider, account, generator, effective theory, approximation, next-to-leading order &                                                            detector, sample, measurement, search, experiment, upper limit, result, confidence, luminosity, gev, proton-proton collision, target, event, resolution, evidence, cm, top quark, fraction, yield, beam, tev, expectation, branching, data, limit, recent result, first time, muon, continuum, paper, range, system, article, increase, mev, physic, transfer, second order, investigation, status \\
-\textbf{Theory    } &           quark, lhc, neutrino, qcd, extra dimension, gluon, mssm, standard model, experimental data, collider, dark matter, chiral perturbation theory, high energy, new physic, hadron, resonance, parton, electroweak, phenomenology, nucleon, contribution, effective theory, mixing, effective field theory, color, meson, distribution, cp, impact, sm, baryon, flavor, decay, plasma, factorization, determination, simulation, pion, threshold, width &  geometry, manifold, algebra, spacetime, theory, partition, gravity, ad, action, string, deformation, correspondence, branes, chern-simons, construction, quantum, supergravity, duality, modulus space, yang-mills, entropy, surface, horizon, space-time, formulation, dimension, field, curvature, quantization, space, background, conformal field theory, identity, transformation, brane, solution, singularity, coordinate, central charge, black hole \\
+\textbf{Experiment} &                                      experimental data, qcd, mssm, quark, dark matter, lhc, color, phenomenology, gluon, plasma, new physic, heavy ion collision, account, inflation, parton, evolution, high energy, factorization, effect, implication, scenario, potential, approach, contribution, electroweak, process, mixing, model, estimate, numerical result, accuracy, integral, approximation, neutrino, unification, higgs, possibility, bound, neutrino mass, calculation &                                                    detector, sample, measurement, search, upper limit, confidence, experiment, atlas, target, cm, luminosity, event, proton-proton collision, evidence, resolution, fraction, result, gev, first time, beam, expectation, yield, tev, world, top quark, branching, range, technique, muon, limit, study, construction, data, reaction, recent result, mev, system, investigation, section, paper \\
+\textbf{Theory    } &  quark, lhc, qcd, neutrino, experimental data, mssm, dark matter, extra dimension, parton, phenomenology, gluon, color, mixing, standard model, electroweak, collider, nucleon, effective theory, sensitivity, new physic, high energy, hadron, chiral perturbation theory, next-to-leading order, impact, neutrino mass, resonance, signal, process, accuracy, collaboration, distribution, flavor, decay, effective field theory, determination, violation, evolution, account, meson &  algebra, manifold, geometry, spacetime, partition, modulus space, gravity, theory, branes, correspondence, central charge, deformation, action, chern-simons, duality, string, horizon, supergravity, ad, quantum, space-time, yang-mills, coordinate, entropy, conformal field theory, sitter, field, construction, surface, dimension, boundary, transformation, black hole, solution, mechanic, space, conjecture, type, class, quantization \\
 \end{longtable}

tables/specific_vocabulary_exp_ph.tex

@@ -2,12 +2,12 @@
 \caption{Vocabulary specific to phenomenology (left column) versus experiment (right column).}
 \label{table:specific_pheno_vocabulary_exp_ph}\\
 \toprule
-                                                                                                                                                                                                                                                                                                                                                                                                                        Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                  Vocabulary specific to experiment \\
+                                                                                                                                                                                                                                                                                                                                                                                                                                                                             Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                                                                                              Vocabulary specific to experiment \\
 \midrule
 \endfirsthead
 \caption[]{Vocabulary specific to phenomenology (left column) versus experiment (right column).} \\
 \toprule
-                                                                                                                                                                                                                                                                                                                                                                                                                        Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                  Vocabulary specific to experiment \\
+                                                                                                                                                                                                                                                                                                                                                                                                                                                                             Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                                                                                              Vocabulary specific to experiment \\
 \midrule
 \endhead
 \midrule
@@ -17,5 +17,5 @@
 
 \bottomrule
 \endlastfoot
-qcd, quark, experimental data, mssm, contribution, high energy, dark matter, gluon, lhc, plasma, implication, factorization, new physic, phenomenology, parton, color, approach, extra dimension, model, inflation, neutrino, process, bound, constraint, effect, correction, integral, evolution, scenario, mixing, numerical result, unification, exchange, estimate, collider, account, generator, effective theory, approximation, next-to-leading order & detector, sample, measurement, search, experiment, upper limit, result, confidence, luminosity, gev, proton-proton collision, target, event, resolution, evidence, cm, top quark, fraction, yield, beam, tev, expectation, branching, data, limit, recent result, first time, muon, continuum, paper, range, system, article, increase, mev, physic, transfer, second order, investigation, status \\
+experimental data, qcd, mssm, quark, dark matter, lhc, color, phenomenology, gluon, plasma, new physic, heavy ion collision, account, inflation, parton, evolution, high energy, factorization, effect, implication, scenario, potential, approach, contribution, electroweak, process, mixing, model, estimate, numerical result, accuracy, integral, approximation, neutrino, unification, higgs, possibility, bound, neutrino mass, calculation, case, early universe, sensitivity, generator, extra dimension & detector, sample, measurement, search, upper limit, confidence, experiment, atlas, target, cm, luminosity, event, proton-proton collision, evidence, resolution, fraction, result, gev, first time, beam, expectation, yield, tev, world, top quark, branching, range, technique, muon, limit, study, construction, data, reaction, recent result, mev, system, investigation, section, paper, observation, respect, differential cross section, electron, experimental result \\
 \end{longtable}

tables/specific_vocabulary_th_ph.tex

@@ -2,12 +2,12 @@
 \caption{Vocabulary specific to phenomenology (left column) versus theory (right column).}
 \label{table:specific_pheno_vocabulary_th_ph}\\
 \toprule
-                                                                                                                                                                                                                                                                                                                                                                                                               Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                                                                                Vocabulary specific to theory \\
+                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                                                                                                                         Vocabulary specific to theory \\
 \midrule
 \endfirsthead
 \caption[]{Vocabulary specific to phenomenology (left column) versus theory (right column).} \\
 \toprule
-                                                                                                                                                                                                                                                                                                                                                                                                               Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                                                                                Vocabulary specific to theory \\
+                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               Vocabulary specific to phenomenology &                                                                                                                                                                                                                                                                                                                                                                                                                                                                         Vocabulary specific to theory \\
 \midrule
 \endhead
 \midrule
@@ -17,5 +17,5 @@
 
 \bottomrule
 \endlastfoot
-quark, lhc, neutrino, qcd, extra dimension, gluon, mssm, standard model, experimental data, collider, dark matter, chiral perturbation theory, high energy, new physic, hadron, resonance, parton, electroweak, phenomenology, nucleon, contribution, effective theory, mixing, effective field theory, color, meson, distribution, cp, impact, sm, baryon, flavor, decay, plasma, factorization, determination, simulation, pion, threshold, width & geometry, manifold, algebra, spacetime, theory, partition, gravity, ad, action, string, deformation, correspondence, branes, chern-simons, construction, quantum, supergravity, duality, modulus space, yang-mills, entropy, surface, horizon, space-time, formulation, dimension, field, curvature, quantization, space, background, conformal field theory, identity, transformation, brane, solution, singularity, coordinate, central charge, black hole \\
+quark, lhc, qcd, neutrino, experimental data, mssm, dark matter, extra dimension, parton, phenomenology, gluon, color, mixing, standard model, electroweak, collider, nucleon, effective theory, sensitivity, new physic, high energy, hadron, chiral perturbation theory, next-to-leading order, impact, neutrino mass, resonance, signal, process, accuracy, collaboration, distribution, flavor, decay, effective field theory, determination, violation, evolution, account, meson, element, baryon, higgs, contribution, gamma & algebra, manifold, geometry, spacetime, partition, modulus space, gravity, theory, branes, correspondence, central charge, deformation, action, chern-simons, duality, string, horizon, supergravity, ad, quantum, space-time, yang-mills, coordinate, entropy, conformal field theory, sitter, field, construction, surface, dimension, boundary, transformation, black hole, solution, mechanic, space, conjecture, type, class, quantization, dirac, formulation, background, connection, massless \\
 \end{longtable}