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@@ -10,7 +10,7 @@ if (basename(here::here()) == "highspeed"){
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}
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```
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-## MRI pre-processing using fMRIPrep
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+## MRI pre-processing:Running fMRIPrep
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### Overview
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@@ -22,7 +22,16 @@ According to the [fMRIPrep documentation](https://fmriprep.org/en/stable/) ...
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Please see the [fMRIPrep documentation](https://fmriprep.org/en/stable/) for details and refer to the paper listed in the References section.
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-#### Container `fmriprep` container, version 1.2.2
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+#### Data availability
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+
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+The data is freely available from https://github.com/lnnrtwttkhn/highspeed-fmriprep and https://gin.g-node.org/lnnrtwttkhn/highspeed-fmriprep.
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+
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+#### License
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+
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+The dataset is licensed under Creative Commons Attribution-ShareAlike 4.0.
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+Please see https://creativecommons.org/licenses/by-sa/4.0/ for details.
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+
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+### Software: `fmriprep` container, version 1.2.2
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We first generated a Singularity container based on the fMRIPrep docker image:
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@@ -30,14 +39,14 @@ We first generated a Singularity container based on the fMRIPrep docker image:
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singularity pull docker://poldracklab/fmriprep:1.2.2
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```
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-#### Run fMRIPrep on the cluster: `highspeed-fmriprep-cluster.sh`
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+### Run fMRIPrep on HPC
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-We then ran fMRIPrep on the high-performance cluster of the Max Planck Institute for Human Development, Berlin, Germany:
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+We then ran fMRIPrep on the high-performance cluster (HPC) of the Max Planck Institute for Human Development, Berlin, Germany using the code in `highspeed-fmriprep-cluster.sh`:
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```{bash, echo=TRUE, code=readLines(file.path(path_root, "code", "fmriprep", "highspeed-fmriprep-cluster.sh")), eval=FALSE}
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```
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-#### References
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+### References
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> Esteban, O., Markiewicz, C. J., Blair, R. W., Moodie, C. A., Isik, A. I., Erramuzpe, A., Kent, J. D., Goncalves, M., DuPre, E., Snyder, M., and et al. (2019). fMRIPrep 1.2.2. [doi:10.5281/zenodo.852659](dx.doi.org/10.5281/zenodo.852659)
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