Bergmann_2022_DataRepository/README.md

Bergmann, Sehara et al., 2022 Data Repository

The data repository for Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Coordination between eye movement and whisking in head fixed mice navigating a plus-maze. eNeuro ENEURO.0089-22.2022 (eye-whisker coordination on Airtrack).

• 01_data: contains datasets used for this study. includes the experimental / analytical procedures used to generate data.
• 02_models: contains the computational model used for this study.
• 03_demos: some code demonstrating the usage of the datareader module, and the core part of our analysis.
• 04_analysis: code for generation of analysis figures.

Downloading the repository

The command below will download this repository.

$ gin get larkumlab/Bergmann_2022_DataRepository 
$ cd Bergmann_2022_DataRepository

# at this point, it will _not_ contain data under `01_data` and `02_models`.
# to download them all, run the command below
# in the "Bergmann_2022_DataRepository" directory:
$ git submodule update --init --recursive # downloads ~3 GiB of data

# some data files in the data sub-repositories will _not_ have
# their contents (i.e. "annexed").
# the command below will enable GIN commands (e.g. `gin get-content`)
# allowing content retrieval:
$ git submodule foreach --recursive 'gin init'

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Copyright (c) 2022, Ronny Bergmann, Keisuke Sehara, Sina E. Dominiak, Julien Colomb, Jens Kremkow, Matthew E. Larkum, Robert N. S. Sachdev, CC-BY 4.0