Keisuke Sehara d8aa0ab8aa update sub-repositories		1 year ago
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01_raw @ 6da6032f43	d8aa0ab8aa update sub-repositories	1 year ago
02_whisker-tracking @ cf386c40b5	d8aa0ab8aa update sub-repositories	1 year ago
03_eye-tracking @ e39430d43f	d8aa0ab8aa update sub-repositories	1 year ago
04_formatted @ 7d1ea6ceac	d8aa0ab8aa update sub-repositories	1 year ago
resources	30593b0701 add datasets	1 year ago
README.md	d9c2e70902 fix broken link	1 year ago

Datasets

01_raw: the raw data being analyzed:
- top-view videos (top): AVI files taken at 200 Hz using ZR View (a custom video acquisition software) under the near-UV lighting, trial-based.
- eye videos (left-eye and right-eye): AVI files taken at 100 Hz using PylonPD (a custom video acquisition software) under the IR-lighting, trial-based.
- behavioral annotation (states): CSV files containing manual annotation of behavioral states based on the top-view videos, trial-based.
02_whisker-tracking: whisker tracking data based on the top-view videos, using the videobatch python module:
- maximal projections (projection): PNG files containing a maximal projection of top-view video frames from each single trial.
- ROIs (ROI): PNG files representing the mask for ROIs generated from the maximal projection images. These ROIs were used for the subsequent tracking.
- color-tracking mask videos (mask): MP4 files containing color masks generated by color-tracking procedure of videobatch.
- tracked whisker positions (result): CSV files containing the center-of-mass positions of tracked whiskers (in pixels).
03_eye-tracking: CSV files containing information about eye- and pupil-tracking based on the eye videos, using DeepLabCut and fitting2d.
04_formatted: the data being used for analysis. Includes a set of videos where the eye videos and behavioral annotations are aligned and overlaid on top of the top-view videos (video quality is not so high).

datacite.yml
Title	Data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack)
Authors	Bergmann,Ronny;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-1477-7502 Sehara,Keisuke;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0003-4368-8143 Dominiak,Sina E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany. Colomb,Julien;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-3127-5520 Kremkow,Jens;Charité–Universitätsmedizin Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-7077-4528 Larkum,Matthew E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-9799-2656 Sachdev,Robert N.S.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-6627-0199
Description	Data repository for Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS, 2022 eNeuro "Coordination between eye movement and whisking in head fixed mice navigating a plus-maze". This repository contains the raw and the formatted data, code for generating figures, and some demo code to work with analysis python modules.
License	Creative Commons 4.0 Attribution (https://creativecommons.org/licenses/by/4.0/)
References	Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Coordination between eye movement and whisking in head fixed mice navigating a plus-maze. [https://doi.org/10.1523/ENEURO.0089-22.2022] (IsSupplementTo) Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Raw data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack) [https://doi.org/10.12751/g-node.g8f1jc] (HasPart) Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Whisker-tracking data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack) [https://doi.org/10.12751/g-node.s62hni] (HasPart) Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Eye-tracking data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack) [https://doi.org/10.12751/g-node.5jz67s] (HasPart) Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Formatted data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack) [https://doi.org/10.12751/g-node.hhxe3v] (HasPart) Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) DeepLabCut model repository for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack) [https://doi.org/10.12751/g-node.1kd2qf] (HasPart)
Funding	EU, EU.670118 EU, EU.327654276 EU, EU.720270 EU, EU.785907 EU, EU.945539 DFG, DFG.250048060 DFG, DFG.246731133 DFG, DFG.267823436
Keywords	Neuroscience Behavioral tracking Motor coordination Whiskers Pupil tracking Airtrack
Resource Type	Dataset

README.md

Datasets