The data repository for Bergmann, Sehara et al., 2022 (eye-whisker coordination on Airtrack). https://doi.org/10.1523/ENEURO.0089-22.2022

Keisuke Sehara 3f320fe067 update README on the analysis 1 year ago
01_data 368be886ea update ORCID 1 year ago
02_models 8043661888 add DLC model 1 year ago
03_demos cd0101ee6e add demo code 1 year ago
04_analysis 3f320fe067 update README on the analysis 1 year ago
.gitignore cd0101ee6e add demo code 1 year ago
.gitmodules 8043661888 add DLC model 1 year ago
LICENSE 36971125d6 Initial commit 1 year ago
README.md 33073240d8 add analysis 1 year ago
datacite.yml 368be886ea update ORCID 1 year ago

README.md

Bergmann, Sehara et al., 2022 Data Repository

The data repository for Bergmann, Sehara et al., 2022 (eye-whisker coordination on Airtrack).

  • 01_data: contains datasets used for this study. includes the experimental / analytical procedures used to generate data.
  • 02_models: contains the computational model used for this study.
  • 03_demos: some code demonstrating the usage of the datareader module, and the core part of our analysis.
  • 04_analysis: code for generation of analysis figures.

Downloading the repository

The command below will download this repository.

$ gin get larkumlab/Bergmann_2022_DataRepository 
$ cd Bergmann_2022_DataRepository

# at this point, it will _not_ contain data under `01_data` and `02_models`.
# to download them all, run the command below
# in the "Bergmann_2022_DataRepository" directory:
$ git submodule update --init --recursive # downloads ~3 GiB of data

# some data files in the data sub-repositories will _not_ have
# their contents (i.e. "annexed").
# the command below will enable GIN commands (e.g. `gin get-content`)
# allowing content retrieval:
$ git submodule foreach --recursive 'gin init'

Copyright (c) 2022, Ronny Bergmann, Keisuke Sehara, Sina E. Dominiak, Julien Colomb, Jens Kremkow, Matthew E. Larkum, Robert N. S. Sachdev, CC-BY 4.0

datacite.yml
Title Data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack)
Authors Bergmann,Ronny;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-1477-7502
Sehara,Keisuke;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0003-4368-8143
Dominiak,Sina E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.
Colomb,Julien;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-3127-5520
Kremkow,Jens;Charité–Universitätsmedizin Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-7077-4528
Larkum,Matthew E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-9799-2656
Sachdev,Robert N.S.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-6627-0199
Description Navigation through complex environments requires motor planning, motor preparation and the coordination between multiple sensory–motor modalities. For example, the stepping motion when we walk is coordinated with motion of the torso, arms, head and eyes. In rodents, movement of the animal through the environment is coordinated with whisking. Even head fixed mice navigating a plus maze position their whiskers asymmetrically with the bilateral asymmetry signifying the upcoming turn direction. Here we report that, in addition to moving their whiskers, on every trial mice also move their eyes conjugately in the direction of the upcoming turn. Not only do mice move their eyes, but they coordinate saccadic eye movement with the asymmetric positioning of the whiskers. Our analysis shows that asymmetric positioning of whiskers predicted the turn direction that mice will make at an earlier stage than eye movement. Consistent with these results, our observations also revealed that whisker asymmetry increases before saccadic eye movement. Importantly, this work shows that when rodents plan for active behavior, their motor plans can involve both eye and whisker movement. We conclude that, when mice are engaged in and moving through complex real-world environments, their behavioral state can be read out in the movement of both their whiskers and eyes.
License Creative Commons 4.0 Attribution (https://creativecommons.org/licenses/by/4.0/)
References Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Coordination between eye movement and whisking in head fixed mice navigating a plus-maze. [] (IsSupplementTo)
Funding EU, EU.670118
EU, EU.327654276
EU, EU.720270
EU, EU.785907
EU, EU.945539
DFG, DFG.250048060
DFG, DFG.246731133
DFG, DFG.267823436
Keywords Neuroscience
Behavioral tracking
Motor coordination
Whiskers
Pupil tracking
Airtrack
Resource Type Dataset