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- # === GLOBAL PARAMETERS ======================================================
- neurotic_config:
- # prepended to remote_data_dir unless remote_data_dir is already a full URL
- remote_data_root: https://gin.g-node.org/jpgill86/Gill-Chiel-eNeuro-2020-data/raw/master
- # these aliases are not officially part of the neurotic spec, but are
- # instead a feature of the YAML language, and nesting them under
- # neurotic_config ensures neurotic will not mistake them for a dataset
- aliases:
- colors:
- - &color-B38 'EFBF46' # yellow
- - &color-I2 'DC5151' # red
- - &color-B8 'DA8BC3' # pink
- - &color-B6B9 '64B5CD' # light blue
- - &color-B3B6B9 '5A9BC5' # medium blue
- - &color-B3 '4F80BD' # dark blue
- - &color-B4B5 '00A86B' # jade green
- - &color-traces '666666' # dark gray
- epoch_encoder_possible_labels: &epoch_encoder_possible_labels
- - B38 activity
- - I2 protraction activity
- - B8 activity
- - B3/6/9/10 activity
- - B4/B5 activity
- - Inward movement
- - Force shoulder end
- - Force rise start
- - Force plateau start
- - Force plateau end
- - Force drop end
- filters: &filters
- - channel: I2
- lowpass: 100 # Hz
- filters-JG07: &filters-JG07 # I2 channel was named differently for JG07
- - channel: I2-L
- lowpass: 100 # Hz
- burst_detectors: &burst_detectors # used only if fast loading is off (lazy=False)
- - &burst_detectors-B38
- spiketrain: B38
- thresholds: [8, 5] # Hz, based on McManus et al. 2014
- - &burst_detectors-I2
- spiketrain: I2
- thresholds: [10, 5] # Hz, same as Cullins et al. 2015a (based on Hurwitz et al. 1996)
- - &burst_detectors-B8
- spiketrain: B8a/b
- thresholds: [3, 3] # Hz, same as Cullins et al. 2015a (based on Morton and Chiel 1993a)
- - &burst_detectors-B6B9
- spiketrain: B6/B9
- thresholds: [10, 5] # Hz, based on Lu et al. 2015
- - &burst_detectors-B3
- spiketrain: B3
- thresholds: [8, 2] # Hz, based on Lu et al. 2015
- - &burst_detectors-B4B5
- spiketrain: B4/B5
- thresholds: [3, 3] # Hz, same as Cullins et al. 2015a ? (Table 1 says 3 Hz, text says first/last spike; based on Warman and Chiel 1995 ?)
- # === DATA SETS ==============================================================
- # --- ANIMAL 1 ---------------------------------------------------------------
- Animal 1 Unloaded 1:
- description: 'JG07 2018-05-20 002 [1169, 1191]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 1
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 1
- data_file: Animal 1 Unloaded 1.axgx
- video_file: Animal 1 Unloaded 1.mp4
- annotations_file: Animal 1 Unloaded 1 Annotations.csv
- epoch_encoder_file: Animal 1 Unloaded 1 Epoch Encoder.csv
- video_offset: 1169 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: &plots-JG07
- - channel: I2-L
- ylim: [-30, 30] # uV
- color: *color-traces
- - channel: RN-L
- ylim: [-60, 60] # uV
- color: *color-traces
- - channel: BN2-L
- ylim: [-100, 100] # uV
- color: *color-traces
- - channel: BN3-L
- ylim: [-80, 80] # uV
- color: *color-traces
- - channel: Force
- ylim: [-10, 300] # mN
- color: *color-traces
- filters: *filters-JG07 # used only if fast loading is off (lazy=False)
- amplitude_discriminators: &litude_discriminators-JG07 # used only if fast loading is off (lazy=False)
- - name: B38
- channel: BN2-L
- units: uV
- amplitude: [15, 30]
- epoch: B38 activity
- color: *color-B38
- - name: I2
- channel: I2-L
- units: uV
- amplitude: [2, 30]
- epoch: I2 protraction activity
- color: *color-I2
- - name: B8a/b
- channel: RN-L
- units: uV
- amplitude: [-40, -10]
- epoch: B8 activity
- color: *color-B8
- - name: B6/B9
- channel: BN2-L
- units: uV
- amplitude: [-40, -12]
- epoch: B3/6/9/10 activity
- color: *color-B6B9
- - name: B3
- channel: BN2-L
- units: uV
- amplitude: [40, 100]
- epoch: B3/6/9/10 activity
- color: *color-B3
- - name: B4/B5
- channel: BN3-L
- units: uV
- amplitude: [50, 120]
- epoch: B4/B5 activity
- color: *color-B4B5
- burst_detectors: &burst_detectors-JG07 # used only if fast loading is off (lazy=False)
- - *burst_detectors-B38
- - *burst_detectors-I2
- - spiketrain: B8a/b
- thresholds: [2, 2] # Hz, both thresholds reduced for this animal because B8a/b signal was weak with few spikes
- - *burst_detectors-B6B9
- - *burst_detectors-B3
- - *burst_detectors-B4B5
- Animal 1 Unloaded 2:
- description: 'JG07 2018-05-20 002 [1495, 1518]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 2
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 2
- data_file: Animal 1 Unloaded 2.axgx
- video_file: Animal 1 Unloaded 2.mp4
- annotations_file: Animal 1 Unloaded 2 Annotations.csv
- epoch_encoder_file: Animal 1 Unloaded 2 Epoch Encoder.csv
- video_offset: 1495 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG07
- filters: *filters-JG07 # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG07 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG07 # used only if fast loading is off (lazy=False)
- Animal 1 Unloaded 3:
- description: 'JG07 2018-05-20 002 [1581, 1615]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 3
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 3
- data_file: Animal 1 Unloaded 3.axgx
- video_file: Animal 1 Unloaded 3.mp4
- annotations_file: Animal 1 Unloaded 3 Annotations.csv
- epoch_encoder_file: Animal 1 Unloaded 3 Epoch Encoder.csv
- video_offset: 1581 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG07
- filters: *filters-JG07 # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG07 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG07 # used only if fast loading is off (lazy=False)
- Animal 1 Loaded 1:
- description: 'JG07 2018-05-20 002 [2716, 2755]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Loaded 1
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 1 Loaded 1
- data_file: Animal 1 Loaded 1.axgx
- video_file: Animal 1 Loaded 1.mp4
- annotations_file: Animal 1 Loaded 1 Annotations.csv
- epoch_encoder_file: Animal 1 Loaded 1 Epoch Encoder.csv
- video_offset: 2716 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG07
- filters: *filters-JG07 # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG07 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG07 # used only if fast loading is off (lazy=False)
- # --- ANIMAL 2 ---------------------------------------------------------------
- Animal 2 Unloaded 1:
- description: 'JG08 2018-06-21 002 [ 256, 287]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 1
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 1
- data_file: Animal 2 Unloaded 1.axgx
- video_file: Animal 2 Unloaded 1.mp4
- annotations_file: Animal 2 Unloaded 1 Annotations.csv
- epoch_encoder_file: Animal 2 Unloaded 1 Epoch Encoder.csv
- video_offset: 256 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: &plots-JG08
- - channel: I2
- ylim: [-30, 30] # uV
- color: *color-traces
- - channel: RN
- ylim: [-100, 100] # uV
- color: *color-traces
- - channel: BN2
- ylim: [-150, 150] # uV
- color: *color-traces
- - channel: BN3
- ylim: [-150, 150] # uV
- color: *color-traces
- - channel: Force
- ylim: [-10, 300] # mN
- color: *color-traces
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: &litude_discriminators-JG08 # used only if fast loading is off (lazy=False)
- - name: B38
- channel: BN2
- units: uV
- amplitude: [17, 26]
- epoch: B38 activity
- color: *color-B38
- - name: I2
- channel: I2
- units: uV
- amplitude: [2, 75]
- epoch: I2 protraction activity
- color: *color-I2
- - name: B8a/b
- channel: RN
- units: uV
- amplitude: [-50, -12]
- epoch: B8 activity
- color: *color-B8
- - name: B6/B9
- channel: BN2
- units: uV
- amplitude: [-50, -30]
- epoch: B3/6/9/10 activity
- color: *color-B6B9
- - name: B3
- channel: BN2
- units: uV
- amplitude: [50, 150]
- epoch: B3/6/9/10 activity
- color: *color-B3
- - name: B4/B5
- channel: BN3
- units: uV
- amplitude: [50, 200]
- epoch: B4/B5 activity
- color: *color-B4B5
- burst_detectors: &burst_detectors-JG08 # used only if fast loading is off (lazy=False)
- - *burst_detectors-B38
- - *burst_detectors-I2
- - *burst_detectors-B8
- - spiketrain: B6/B9
- thresholds: [10, 3] # Hz, end threshold reduced for this animal
- - *burst_detectors-B3
- - *burst_detectors-B4B5
- Animal 2 Unloaded 2:
- description: 'JG08 2018-06-21 002 [ 454, 481]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 2
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 2
- data_file: Animal 2 Unloaded 2.axgx
- video_file: Animal 2 Unloaded 2.mp4
- annotations_file: Animal 2 Unloaded 2 Annotations.csv
- epoch_encoder_file: Animal 2 Unloaded 2 Epoch Encoder.csv
- video_offset: 454 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG08
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False)
- Animal 2 Loaded 1:
- description: 'JG08 2018-06-21 002 [ 141, 210]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 1
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 1
- data_file: Animal 2 Loaded 1.axgx
- video_file: Animal 2 Loaded 1.mp4
- annotations_file: Animal 2 Loaded 1 Annotations.csv
- epoch_encoder_file: Animal 2 Loaded 1 Epoch Encoder.csv
- video_offset: 141 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG08
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False)
- Animal 2 Loaded 2:
- description: 'JG08 2018-06-21 002 [ 660, 701]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 2
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 2
- data_file: Animal 2 Loaded 2.axgx
- video_file: Animal 2 Loaded 2.mp4
- annotations_file: Animal 2 Loaded 2 Annotations.csv
- epoch_encoder_file: Animal 2 Loaded 2 Epoch Encoder.csv
- video_offset: 660 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG08
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False)
- Animal 2 Loaded 3:
- description: 'JG08 2018-06-21 002 [1448, 1477]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 3
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 3
- data_file: Animal 2 Loaded 3.axgx
- video_file: Animal 2 Loaded 3.mp4
- annotations_file: Animal 2 Loaded 3 Annotations.csv
- epoch_encoder_file: Animal 2 Loaded 3 Epoch Encoder.csv
- video_offset: 1448 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG08
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG08 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG08 # used only if fast loading is off (lazy=False)
- # --- ANIMAL 3 ---------------------------------------------------------------
- Animal 3 Unloaded 1:
- description: 'JG11 2019-04-03 001 [1791, 1819]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 1
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 1
- data_file: Animal 3 Unloaded 1.axgx
- video_file: Animal 3 Unloaded 1.mp4
- annotations_file: Animal 3 Unloaded 1 Annotations.csv
- epoch_encoder_file: Animal 3 Unloaded 1 Epoch Encoder.csv
- video_offset: 1791 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: &plots-JG11
- - channel: I2
- ylim: [-30, 30] # uV
- color: *color-traces
- - channel: RN
- ylim: [-30, 30] # uV
- color: *color-traces
- - channel: BN2
- ylim: [-100, 100] # uV
- color: *color-traces
- - channel: BN3-PROX
- ylim: [-100, 100] # uV
- color: *color-traces
- - channel: Force
- ylim: [-10, 500] # mN
- color: *color-traces
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: &litude_discriminators-JG11 # used only if fast loading is off (lazy=False)
- - name: B38
- channel: BN2
- units: uV
- amplitude: [20, 50]
- epoch: B38 activity
- color: *color-B38
- - name: I2
- channel: I2
- units: uV
- amplitude: [2, 20]
- epoch: I2 protraction activity
- color: *color-I2
- - name: B8a/b
- channel: RN
- units: uV
- amplitude: [-30, -8]
- epoch: B8 activity
- color: *color-B8
- - name: B6/B9
- channel: BN2
- units: uV
- amplitude: [-60, -15]
- epoch: B3/6/9/10 activity
- color: *color-B6B9
- - name: B3
- channel: BN2
- units: uV
- amplitude: [-120, -60]
- epoch: B3/6/9/10 activity
- color: *color-B3
- - name: B4/B5
- channel: BN3-PROX
- units: uV
- amplitude: [70, 150]
- epoch: B4/B5 activity
- color: *color-B4B5
- burst_detectors: &burst_detectors-JG11 # used only if fast loading is off (lazy=False)
- - *burst_detectors-B38
- - *burst_detectors-I2
- - *burst_detectors-B8
- - *burst_detectors-B6B9
- - *burst_detectors-B3
- - spiketrain: B4/B5
- thresholds: [1.5, 1.5] # Hz, both thresholds reduced for this animal because only one neuron appeared to project
- Animal 3 Unloaded 2:
- description: 'JG11 2019-04-03 004 [ 551, 568]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 2
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 2
- data_file: Animal 3 Unloaded 2.axgx
- video_file: Animal 3 Unloaded 2.mp4
- annotations_file: Animal 3 Unloaded 2 Annotations.csv
- epoch_encoder_file: Animal 3 Unloaded 2 Epoch Encoder.csv
- video_offset: 551 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG11
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG11 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG11 # used only if fast loading is off (lazy=False)
- Animal 3 Loaded 1:
- description: 'JG11 2019-04-03 004 [1226, 1280]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Loaded 1
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 3 Loaded 1
- data_file: Animal 3 Loaded 1.axgx
- video_file: Animal 3 Loaded 1.mp4
- annotations_file: Animal 3 Loaded 1 Annotations.csv
- epoch_encoder_file: Animal 3 Loaded 1 Epoch Encoder.csv
- video_offset: 1226 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG11
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG11 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG11 # used only if fast loading is off (lazy=False)
- # --- ANIMAL 4 ---------------------------------------------------------------
- Animal 4 Unloaded 1:
- description: 'JG12 2019-05-10 002 [ 147, 165]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 1
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 1
- data_file: Animal 4 Unloaded 1.axgx
- video_file: Animal 4 Unloaded 1.mp4
- annotations_file: Animal 4 Unloaded 1 Annotations.csv
- epoch_encoder_file: Animal 4 Unloaded 1 Epoch Encoder.csv
- video_offset: 147 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: &plots-JG12
- - channel: I2
- ylim: [-50, 50] # uV
- color: *color-traces
- - channel: RN
- ylim: [-25, 25] # uV
- color: *color-traces
- - channel: BN2
- ylim: [-45, 45] # uV
- color: *color-traces
- - channel: BN3-DIST
- ylim: [-60, 60] # uV
- color: *color-traces
- - channel: Force
- ylim: [-10, 500] # mN
- color: *color-traces
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: &litude_discriminators-JG12 # used only if fast loading is off (lazy=False)
- - name: B38
- channel: BN2
- units: uV
- amplitude: [7, 20]
- epoch: B38 activity
- color: *color-B38
- - name: I2
- channel: I2
- units: uV
- amplitude: [2, 75]
- epoch: I2 protraction activity
- color: *color-I2
- - name: B8a/b
- channel: RN
- units: uV
- amplitude: [-30, -8]
- epoch: B8 activity
- color: *color-B8
- - name: B6/B9
- channel: BN2
- units: uV
- amplitude: [-25, -9]
- epoch: B3/6/9/10 activity
- color: *color-B6B9
- - name: B3
- channel: BN2
- units: uV
- amplitude: [-60, -25]
- epoch: B3/6/9/10 activity
- color: *color-B3
- - name: B4/B5
- channel: BN3-DIST
- units: uV
- amplitude: [-80, -20]
- epoch: B4/B5 activity
- color: *color-B4B5
- burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
- Animal 4 Unloaded 2:
- description: 'JG12 2019-05-10 002 [ 228, 245]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2
- data_file: Animal 4 Unloaded 2.axgx
- video_file: Animal 4 Unloaded 2.mp4
- annotations_file: Animal 4 Unloaded 2 Annotations.csv
- epoch_encoder_file: Animal 4 Unloaded 2 Epoch Encoder.csv
- video_offset: 228 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG12
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
- Animal 4 Unloaded 3:
- description: 'JG12 2019-05-10 002 [ 277, 291]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 3
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 3
- data_file: Animal 4 Unloaded 3.axgx
- video_file: Animal 4 Unloaded 3.mp4
- annotations_file: Animal 4 Unloaded 3 Annotations.csv
- epoch_encoder_file: Animal 4 Unloaded 3 Epoch Encoder.csv
- video_offset: 277 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG12
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
- Animal 4 Loaded 1:
- description: 'JG12 2019-05-10 002 [ 434, 465]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 1
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 1
- data_file: Animal 4 Loaded 1.axgx
- video_file: Animal 4 Loaded 1.mp4
- annotations_file: Animal 4 Loaded 1 Annotations.csv
- epoch_encoder_file: Animal 4 Loaded 1 Epoch Encoder.csv
- video_offset: 434 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG12
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
- Animal 4 Loaded 2:
- description: 'JG12 2019-05-10 002 [2897, 2937]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2
- data_file: Animal 4 Loaded 2.axgx
- video_file: Animal 4 Loaded 2.mp4
- annotations_file: Animal 4 Loaded 2 Annotations.csv
- epoch_encoder_file: Animal 4 Loaded 2 Epoch Encoder.csv
- video_offset: 2897 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG12
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
- Animal 4 Unloaded 2 Superset:
- description: 'JG12 2019-05-10 002 [ 223.4, 261.4]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2 Superset
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2 Superset
- data_file: Animal 4 Unloaded 2 Superset.axgx
- video_file: Animal 4 Unloaded 2 Superset.mp4
- annotations_file: Animal 4 Unloaded 2 Superset Annotations.csv
- epoch_encoder_file: Animal 4 Unloaded 2 Superset Epoch Encoder.csv
- video_offset: 223.4 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG12
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
- Animal 4 Loaded 2 Superset:
- description: 'JG12 2019-05-10 002 [2875.3, 3039.3]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2 Superset
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2 Superset
- data_file: Animal 4 Loaded 2 Superset.axgx
- video_file: Animal 4 Loaded 2 Superset.mp4
- annotations_file: Animal 4 Loaded 2 Superset Annotations.csv
- epoch_encoder_file: Animal 4 Loaded 2 Superset Epoch Encoder.csv
- video_offset: 2875.3 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG12
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG12 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors # used only if fast loading is off (lazy=False)
- # --- ANIMAL 5 ---------------------------------------------------------------
- Animal 5 Unloaded 1:
- description: 'JG14 2019-07-30 001 [1834, 1865]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 1
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 1
- data_file: Animal 5 Unloaded 1.axgx
- video_file: Animal 5 Unloaded 1.mp4
- annotations_file: Animal 5 Unloaded 1 Annotations.csv
- epoch_encoder_file: Animal 5 Unloaded 1 Epoch Encoder.csv
- video_offset: 1834 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: &plots-JG14
- - channel: I2
- ylim: [-30, 30] # uV
- color: *color-traces
- - channel: RN
- ylim: [-30, 30] # uV
- color: *color-traces
- - channel: BN2
- ylim: [-50, 50] # uV
- color: *color-traces
- - channel: BN3-PROX
- ylim: [-60, 60] # uV
- color: *color-traces
- - channel: Force
- ylim: [-10, 500] # mN
- color: *color-traces
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: &litude_discriminators-JG14 # used only if fast loading is off (lazy=False)
- - name: B38
- channel: BN2
- units: uV
- amplitude: [12, 25]
- epoch: B38 activity
- color: *color-B38
- - name: I2
- channel: I2
- units: uV
- amplitude: [1, 10]
- epoch: I2 protraction activity
- color: *color-I2
- - name: B8a/b
- channel: RN
- units: uV
- amplitude: [-15, -6]
- epoch: B8 activity
- color: *color-B8
- - name: B6/B9
- channel: BN2
- units: uV
- amplitude: [-30, -20]
- epoch: B3/6/9/10 activity
- color: *color-B6B9
- - name: B3
- channel: BN2
- units: uV
- amplitude: [-80, -30]
- epoch: B3/6/9/10 activity
- color: *color-B3
- - name: B4/B5
- channel: BN3-PROX
- units: uV
- amplitude: [-40, -13]
- epoch: B4/B5 activity
- color: *color-B4B5
- burst_detectors: &burst_detectors-JG14 # used only if fast loading is off (lazy=False)
- - *burst_detectors-B38
- - *burst_detectors-I2
- - *burst_detectors-B8
- - spiketrain: B6/B9
- thresholds: [4, 2] # Hz, both thresholds reduced for this animal because B6/B9 always fired slowly
- - *burst_detectors-B3
- - *burst_detectors-B4B5
- Animal 5 Unloaded 2:
- description: 'JG14 2019-07-30 001 [1909, 1943]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 2
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 2
- data_file: Animal 5 Unloaded 2.axgx
- video_file: Animal 5 Unloaded 2.mp4
- annotations_file: Animal 5 Unloaded 2 Annotations.csv
- epoch_encoder_file: Animal 5 Unloaded 2 Epoch Encoder.csv
- video_offset: 1909 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG14
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG14 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG14 # used only if fast loading is off (lazy=False)
- Animal 5 Unloaded 3:
- description: 'JG14 2019-07-30 001 [2049, 2084]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 3
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 3
- data_file: Animal 5 Unloaded 3.axgx
- video_file: Animal 5 Unloaded 3.mp4
- annotations_file: Animal 5 Unloaded 3 Annotations.csv
- epoch_encoder_file: Animal 5 Unloaded 3 Epoch Encoder.csv
- video_offset: 2049 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG14
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG14 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG14 # used only if fast loading is off (lazy=False)
- Animal 5 Loaded 1:
- description: 'JG14 2019-07-29 004 [ 828, 870]'
- data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Loaded 1
- remote_data_dir: Gill-Chiel-eNeuro-2020-data/Animal 5 Loaded 1
- data_file: Animal 5 Loaded 1.axgx
- video_file: Animal 5 Loaded 1.mp4
- annotations_file: Animal 5 Loaded 1 Annotations.csv
- epoch_encoder_file: Animal 5 Loaded 1 Epoch Encoder.csv
- video_offset: 828 # sec
- epoch_encoder_possible_labels: *epoch_encoder_possible_labels
- plots: *plots-JG14
- filters: *filters # used only if fast loading is off (lazy=False)
- amplitude_discriminators: *amplitude_discriminators-JG14 # used only if fast loading is off (lazy=False)
- burst_detectors: *burst_detectors-JG14 # used only if fast loading is off (lazy=False)
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