Gill-Chiel-eNeuro-2020-data/Gill-Chiel-eNeuro-2020-metadata.yml

# ===  GLOBAL PARAMETERS  ======================================================

neurotic_config:

    # prepended to remote_data_dir unless remote_data_dir is already a full URL
    remote_data_root: https://gin.g-node.org/jpgill86/Gill-Chiel-eNeuro-2020-data/raw/master

    # these aliases are not officially part of the neurotic spec, but are
    # instead a feature of the YAML language, and nesting them under
    # neurotic_config ensures neurotic will not mistake them for a dataset
    aliases:
        colors:
            - &color-B38    'EFBF46' # yellow
            - &color-I2     'DC5151' # red
            - &color-B8     'DA8BC3' # pink
            - &color-B6B9   '64B5CD' # light blue
            - &color-B3B6B9 '5A9BC5' # medium blue
            - &color-B3     '4F80BD' # dark blue
            - &color-B4B5   '00A86B' # jade green
            - &color-traces '666666' # dark gray

        epoch_encoder_possible_labels: &epoch_encoder_possible_labels
            - B38 activity
            - I2 protraction activity
            - B8 activity
            - B3/6/9/10 activity
            - B4/B5 activity
            - Inward movement
            - Force shoulder end
            - Force rise start
            - Force plateau start
            - Force plateau end
            - Force drop end

        filters: &filters
            - channel: I2
              lowpass: 100 # Hz
        filters-JG07: &filters-JG07 # I2 channel was named differently for JG07
            - channel: I2-L
              lowpass: 100 # Hz

        burst_detectors: &burst_detectors  # used only if fast loading is off (lazy=False)
            - &burst_detectors-B38
              spiketrain: B38
              thresholds: [8, 5] # Hz, based on McManus et al. 2014
            - &burst_detectors-I2
              spiketrain: I2
              thresholds: [10, 5] # Hz, same as Cullins et al. 2015a (based on Hurwitz et al. 1996)
            - &burst_detectors-B8
              spiketrain: B8a/b
              thresholds: [3, 3] # Hz, same as Cullins et al. 2015a (based on Morton and Chiel 1993a)
            - &burst_detectors-B6B9
              spiketrain: B6/B9
              thresholds: [10, 5] # Hz, based on Lu et al. 2015
            - &burst_detectors-B3
              spiketrain: B3
              thresholds: [8, 2] # Hz, based on Lu et al. 2015
            - &burst_detectors-B4B5
              spiketrain: B4/B5
              thresholds: [3, 3] # Hz, same as Cullins et al. 2015a ? (Table 1 says 3 Hz, text says first/last spike; based on Warman and Chiel 1995 ?)

# ===  DATA SETS  ==============================================================

# ---  ANIMAL 1  ---------------------------------------------------------------

Animal 1 Unloaded 1:
    description: 'JG07 2018-05-20 002 [1169, 1191]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 1
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 1
    data_file:          Animal 1 Unloaded 1.axgx
    video_file:         Animal 1 Unloaded 1.mp4
    annotations_file:   Animal 1 Unloaded 1 Annotations.csv
    epoch_encoder_file: Animal 1 Unloaded 1 Epoch Encoder.csv

    video_offset: 1169 # sec

    epoch_encoder_possible_labels: *epoch_encoder_possible_labels

    plots: &plots-JG07
        - channel: I2-L
          ylim: [-30, 30] # uV
          color: *color-traces
        - channel: RN-L
          ylim: [-60, 60] # uV
          color: *color-traces
        - channel: BN2-L
          ylim: [-100, 100] # uV
          color: *color-traces
        - channel: BN3-L
          ylim: [-80, 80] # uV
          color: *color-traces
        - channel: Force
          ylim: [-10, 300] # mN
          color: *color-traces

    filters: *filters-JG07  # used only if fast loading is off (lazy=False)

    amplitude_discriminators: &amplitude_discriminators-JG07  # used only if fast loading is off (lazy=False)
        - name: B38
          channel: BN2-L
          units: uV
          amplitude: [15, 30]
          epoch: B38 activity
          color: *color-B38
        - name: I2
          channel: I2-L
          units: uV
          amplitude: [2, 30]
          epoch: I2 protraction activity
          color: *color-I2
        - name: B8a/b
          channel: RN-L
          units: uV
          amplitude: [-40, -10]
          epoch: B8 activity
          color: *color-B8
        - name: B6/B9
          channel: BN2-L
          units: uV
          amplitude: [-40, -12]
          epoch: B3/6/9/10 activity
          color: *color-B6B9
        - name: B3
          channel: BN2-L
          units: uV
          amplitude: [40, 100]
          epoch: B3/6/9/10 activity
          color: *color-B3
        - name: B4/B5
          channel: BN3-L
          units: uV
          amplitude: [50, 120]
          epoch: B4/B5 activity
          color: *color-B4B5

    burst_detectors: &burst_detectors-JG07  # used only if fast loading is off (lazy=False)
        - *burst_detectors-B38
        - *burst_detectors-I2
        - spiketrain: B8a/b
          thresholds: [2, 2] # Hz, both thresholds reduced for this animal because B8a/b signal was weak with few spikes
        - *burst_detectors-B6B9
        - *burst_detectors-B3
        - *burst_detectors-B4B5

Animal 1 Unloaded 2:
    description: 'JG07 2018-05-20 002 [1495, 1518]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 2
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 2
    data_file:          Animal 1 Unloaded 2.axgx
    video_file:         Animal 1 Unloaded 2.mp4
    annotations_file:   Animal 1 Unloaded 2 Annotations.csv
    epoch_encoder_file: Animal 1 Unloaded 2 Epoch Encoder.csv

    video_offset: 1495 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG07

    filters: *filters-JG07  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG07  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG07  # used only if fast loading is off (lazy=False)

Animal 1 Unloaded 3:
    description: 'JG07 2018-05-20 002 [1581, 1615]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 3
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 1 Unloaded 3
    data_file:          Animal 1 Unloaded 3.axgx
    video_file:         Animal 1 Unloaded 3.mp4
    annotations_file:   Animal 1 Unloaded 3 Annotations.csv
    epoch_encoder_file: Animal 1 Unloaded 3 Epoch Encoder.csv

    video_offset: 1581 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG07

    filters: *filters-JG07  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG07  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG07  # used only if fast loading is off (lazy=False)

Animal 1 Loaded 1:
    description: 'JG07 2018-05-20 002 [2716, 2755]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 1 Loaded 1
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 1 Loaded 1
    data_file:          Animal 1 Loaded 1.axgx
    video_file:         Animal 1 Loaded 1.mp4
    annotations_file:   Animal 1 Loaded 1 Annotations.csv
    epoch_encoder_file: Animal 1 Loaded 1 Epoch Encoder.csv

    video_offset: 2716 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG07

    filters: *filters-JG07  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG07  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG07  # used only if fast loading is off (lazy=False)

# ---  ANIMAL 2  ---------------------------------------------------------------

Animal 2 Unloaded 1:
    description: 'JG08 2018-06-21 002 [ 256,  287]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 1
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 1
    data_file:          Animal 2 Unloaded 1.axgx
    video_file:         Animal 2 Unloaded 1.mp4
    annotations_file:   Animal 2 Unloaded 1 Annotations.csv
    epoch_encoder_file: Animal 2 Unloaded 1 Epoch Encoder.csv

    video_offset: 256 # sec

    epoch_encoder_possible_labels: *epoch_encoder_possible_labels

    plots: &plots-JG08
        - channel: I2
          ylim: [-30, 30] # uV
          color: *color-traces
        - channel: RN
          ylim: [-100, 100] # uV
          color: *color-traces
        - channel: BN2
          ylim: [-150, 150] # uV
          color: *color-traces
        - channel: BN3
          ylim: [-150, 150] # uV
          color: *color-traces
        - channel: Force
          ylim: [-10, 300] # mN
          color: *color-traces

    filters: *filters  # used only if fast loading is off (lazy=False)

    amplitude_discriminators: &amplitude_discriminators-JG08  # used only if fast loading is off (lazy=False)
        - name: B38
          channel: BN2
          units: uV
          amplitude: [17, 26]
          epoch: B38 activity
          color: *color-B38
        - name: I2
          channel: I2
          units: uV
          amplitude: [2, 75]
          epoch: I2 protraction activity
          color: *color-I2
        - name: B8a/b
          channel: RN
          units: uV
          amplitude: [-50, -12]
          epoch: B8 activity
          color: *color-B8
        - name: B6/B9
          channel: BN2
          units: uV
          amplitude: [-50, -30]
          epoch: B3/6/9/10 activity
          color: *color-B6B9
        - name: B3
          channel: BN2
          units: uV
          amplitude: [50, 150]
          epoch: B3/6/9/10 activity
          color: *color-B3
        - name: B4/B5
          channel: BN3
          units: uV
          amplitude: [50, 200]
          epoch: B4/B5 activity
          color: *color-B4B5

    burst_detectors: &burst_detectors-JG08  # used only if fast loading is off (lazy=False)
        - *burst_detectors-B38
        - *burst_detectors-I2
        - *burst_detectors-B8
        - spiketrain: B6/B9
          thresholds: [10, 3] # Hz, end threshold reduced for this animal
        - *burst_detectors-B3
        - *burst_detectors-B4B5

Animal 2 Unloaded 2:
    description: 'JG08 2018-06-21 002 [ 454,  481]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 2
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 2 Unloaded 2
    data_file:          Animal 2 Unloaded 2.axgx
    video_file:         Animal 2 Unloaded 2.mp4
    annotations_file:   Animal 2 Unloaded 2 Annotations.csv
    epoch_encoder_file: Animal 2 Unloaded 2 Epoch Encoder.csv

    video_offset: 454 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG08

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG08  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG08  # used only if fast loading is off (lazy=False)

Animal 2 Loaded 1:
    description: 'JG08 2018-06-21 002 [ 141,  210]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 1
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 1
    data_file:          Animal 2 Loaded 1.axgx
    video_file:         Animal 2 Loaded 1.mp4
    annotations_file:   Animal 2 Loaded 1 Annotations.csv
    epoch_encoder_file: Animal 2 Loaded 1 Epoch Encoder.csv

    video_offset: 141 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG08

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG08  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG08  # used only if fast loading is off (lazy=False)

Animal 2 Loaded 2:
    description: 'JG08 2018-06-21 002 [ 660,  701]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 2
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 2
    data_file:          Animal 2 Loaded 2.axgx
    video_file:         Animal 2 Loaded 2.mp4
    annotations_file:   Animal 2 Loaded 2 Annotations.csv
    epoch_encoder_file: Animal 2 Loaded 2 Epoch Encoder.csv

    video_offset: 660 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG08

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG08  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG08  # used only if fast loading is off (lazy=False)

Animal 2 Loaded 3:
    description: 'JG08 2018-06-21 002 [1448, 1477]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 3
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 2 Loaded 3
    data_file:          Animal 2 Loaded 3.axgx
    video_file:         Animal 2 Loaded 3.mp4
    annotations_file:   Animal 2 Loaded 3 Annotations.csv
    epoch_encoder_file: Animal 2 Loaded 3 Epoch Encoder.csv

    video_offset: 1448 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG08

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG08  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG08  # used only if fast loading is off (lazy=False)

# ---  ANIMAL 3  ---------------------------------------------------------------

Animal 3 Unloaded 1:
    description: 'JG11 2019-04-03 001 [1791, 1819]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 1
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 1
    data_file:          Animal 3 Unloaded 1.axgx
    video_file:         Animal 3 Unloaded 1.mp4
    annotations_file:   Animal 3 Unloaded 1 Annotations.csv
    epoch_encoder_file: Animal 3 Unloaded 1 Epoch Encoder.csv

    video_offset: 1791 # sec

    epoch_encoder_possible_labels: *epoch_encoder_possible_labels

    plots: &plots-JG11
        - channel: I2
          ylim: [-30, 30] # uV
          color: *color-traces
        - channel: RN
          ylim: [-30, 30] # uV
          color: *color-traces
        - channel: BN2
          ylim: [-100, 100] # uV
          color: *color-traces
        - channel: BN3-PROX
          ylim: [-100, 100] # uV
          color: *color-traces
        - channel: Force
          ylim: [-10, 500] # mN
          color: *color-traces

    filters: *filters  # used only if fast loading is off (lazy=False)

    amplitude_discriminators: &amplitude_discriminators-JG11  # used only if fast loading is off (lazy=False)
        - name: B38
          channel: BN2
          units: uV
          amplitude: [20, 50]
          epoch: B38 activity
          color: *color-B38
        - name: I2
          channel: I2
          units: uV
          amplitude: [2, 20]
          epoch: I2 protraction activity
          color: *color-I2
        - name: B8a/b
          channel: RN
          units: uV
          amplitude: [-30, -8]
          epoch: B8 activity
          color: *color-B8
        - name: B6/B9
          channel: BN2
          units: uV
          amplitude: [-60, -15]
          epoch: B3/6/9/10 activity
          color: *color-B6B9
        - name: B3
          channel: BN2
          units: uV
          amplitude: [-120, -60]
          epoch: B3/6/9/10 activity
          color: *color-B3
        - name: B4/B5
          channel: BN3-PROX
          units: uV
          amplitude: [70, 150]
          epoch: B4/B5 activity
          color: *color-B4B5

    burst_detectors: &burst_detectors-JG11  # used only if fast loading is off (lazy=False)
        - *burst_detectors-B38
        - *burst_detectors-I2
        - *burst_detectors-B8
        - *burst_detectors-B6B9
        - *burst_detectors-B3
        - spiketrain: B4/B5
          thresholds: [1.5, 1.5] # Hz, both thresholds reduced for this animal because only one neuron appeared to project

Animal 3 Unloaded 2:
    description: 'JG11 2019-04-03 004 [ 551,  568]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 2
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 3 Unloaded 2
    data_file:          Animal 3 Unloaded 2.axgx
    video_file:         Animal 3 Unloaded 2.mp4
    annotations_file:   Animal 3 Unloaded 2 Annotations.csv
    epoch_encoder_file: Animal 3 Unloaded 2 Epoch Encoder.csv

    video_offset: 551 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG11

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG11  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG11  # used only if fast loading is off (lazy=False)

Animal 3 Loaded 1:
    description: 'JG11 2019-04-03 004 [1226, 1280]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 3 Loaded 1
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 3 Loaded 1
    data_file:          Animal 3 Loaded 1.axgx
    video_file:         Animal 3 Loaded 1.mp4
    annotations_file:   Animal 3 Loaded 1 Annotations.csv
    epoch_encoder_file: Animal 3 Loaded 1 Epoch Encoder.csv

    video_offset: 1226 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG11

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG11  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG11  # used only if fast loading is off (lazy=False)

# ---  ANIMAL 4  ---------------------------------------------------------------

Animal 4 Unloaded 1:
    description: 'JG12 2019-05-10 002 [ 147,  165]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 1
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 1
    data_file:          Animal 4 Unloaded 1.axgx
    video_file:         Animal 4 Unloaded 1.mp4
    annotations_file:   Animal 4 Unloaded 1 Annotations.csv
    epoch_encoder_file: Animal 4 Unloaded 1 Epoch Encoder.csv

    video_offset: 147 # sec

    epoch_encoder_possible_labels: *epoch_encoder_possible_labels

    plots: &plots-JG12
        - channel: I2
          ylim: [-50, 50] # uV
          color: *color-traces
        - channel: RN
          ylim: [-25, 25] # uV
          color: *color-traces
        - channel: BN2
          ylim: [-45, 45] # uV
          color: *color-traces
        - channel: BN3-DIST
          ylim: [-60, 60] # uV
          color: *color-traces
        - channel: Force
          ylim: [-10, 500] # mN
          color: *color-traces

    filters: *filters  # used only if fast loading is off (lazy=False)

    amplitude_discriminators: &amplitude_discriminators-JG12  # used only if fast loading is off (lazy=False)
        - name: B38
          channel: BN2
          units: uV
          amplitude: [7, 20]
          epoch: B38 activity
          color: *color-B38
        - name: I2
          channel: I2
          units: uV
          amplitude: [2, 75]
          epoch: I2 protraction activity
          color: *color-I2
        - name: B8a/b
          channel: RN
          units: uV
          amplitude: [-30, -8]
          epoch: B8 activity
          color: *color-B8
        - name: B6/B9
          channel: BN2
          units: uV
          amplitude: [-25, -9]
          epoch: B3/6/9/10 activity
          color: *color-B6B9
        - name: B3
          channel: BN2
          units: uV
          amplitude: [-60, -25]
          epoch: B3/6/9/10 activity
          color: *color-B3
        - name: B4/B5
          channel: BN3-DIST
          units: uV
          amplitude: [-80, -20]
          epoch: B4/B5 activity
          color: *color-B4B5

    burst_detectors: *burst_detectors  # used only if fast loading is off (lazy=False)

Animal 4 Unloaded 2:
    description: 'JG12 2019-05-10 002 [ 228,  245]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2
    data_file:          Animal 4 Unloaded 2.axgx
    video_file:         Animal 4 Unloaded 2.mp4
    annotations_file:   Animal 4 Unloaded 2 Annotations.csv
    epoch_encoder_file: Animal 4 Unloaded 2 Epoch Encoder.csv

    video_offset: 228 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG12

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG12  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors  # used only if fast loading is off (lazy=False)

Animal 4 Unloaded 3:
    description: 'JG12 2019-05-10 002 [ 277,  291]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 3
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 3
    data_file:          Animal 4 Unloaded 3.axgx
    video_file:         Animal 4 Unloaded 3.mp4
    annotations_file:   Animal 4 Unloaded 3 Annotations.csv
    epoch_encoder_file: Animal 4 Unloaded 3 Epoch Encoder.csv

    video_offset: 277 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG12

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG12  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors  # used only if fast loading is off (lazy=False)

Animal 4 Loaded 1:
    description: 'JG12 2019-05-10 002 [ 434,  465]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 1
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 1
    data_file:          Animal 4 Loaded 1.axgx
    video_file:         Animal 4 Loaded 1.mp4
    annotations_file:   Animal 4 Loaded 1 Annotations.csv
    epoch_encoder_file: Animal 4 Loaded 1 Epoch Encoder.csv

    video_offset: 434 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG12

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG12  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors  # used only if fast loading is off (lazy=False)

Animal 4 Loaded 2:
    description: 'JG12 2019-05-10 002 [2897, 2937]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2
    data_file:          Animal 4 Loaded 2.axgx
    video_file:         Animal 4 Loaded 2.mp4
    annotations_file:   Animal 4 Loaded 2 Annotations.csv
    epoch_encoder_file: Animal 4 Loaded 2 Epoch Encoder.csv

    video_offset: 2897 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG12

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG12  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors  # used only if fast loading is off (lazy=False)

Animal 4 Unloaded 2 Superset:
    description: 'JG12 2019-05-10 002 [ 223.4,  261.4]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2 Superset
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 4 Unloaded 2 Superset
    data_file:          Animal 4 Unloaded 2 Superset.axgx
    video_file:         Animal 4 Unloaded 2 Superset.mp4
    annotations_file:   Animal 4 Unloaded 2 Superset Annotations.csv
    epoch_encoder_file: Animal 4 Unloaded 2 Superset Epoch Encoder.csv

    video_offset: 223.4 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG12

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG12  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors  # used only if fast loading is off (lazy=False)

Animal 4 Loaded 2 Superset:
    description: 'JG12 2019-05-10 002 [2875.3, 3039.3]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2 Superset
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 4 Loaded 2 Superset
    data_file:          Animal 4 Loaded 2 Superset.axgx
    video_file:         Animal 4 Loaded 2 Superset.mp4
    annotations_file:   Animal 4 Loaded 2 Superset Annotations.csv
    epoch_encoder_file: Animal 4 Loaded 2 Superset Epoch Encoder.csv

    video_offset: 2875.3 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG12

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG12  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors  # used only if fast loading is off (lazy=False)

# ---  ANIMAL 5  ---------------------------------------------------------------

Animal 5 Unloaded 1:
    description: 'JG14 2019-07-30 001 [1834, 1865]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 1
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 1
    data_file:          Animal 5 Unloaded 1.axgx
    video_file:         Animal 5 Unloaded 1.mp4
    annotations_file:   Animal 5 Unloaded 1 Annotations.csv
    epoch_encoder_file: Animal 5 Unloaded 1 Epoch Encoder.csv

    video_offset: 1834 # sec

    epoch_encoder_possible_labels: *epoch_encoder_possible_labels

    plots: &plots-JG14
        - channel: I2
          ylim: [-30, 30] # uV
          color: *color-traces
        - channel: RN
          ylim: [-30, 30] # uV
          color: *color-traces
        - channel: BN2
          ylim: [-50, 50] # uV
          color: *color-traces
        - channel: BN3-PROX
          ylim: [-60, 60] # uV
          color: *color-traces
        - channel: Force
          ylim: [-10, 500] # mN
          color: *color-traces

    filters: *filters  # used only if fast loading is off (lazy=False)

    amplitude_discriminators: &amplitude_discriminators-JG14  # used only if fast loading is off (lazy=False)
        - name: B38
          channel: BN2
          units: uV
          amplitude: [12, 25]
          epoch: B38 activity
          color: *color-B38
        - name: I2
          channel: I2
          units: uV
          amplitude: [1, 10]
          epoch: I2 protraction activity
          color: *color-I2
        - name: B8a/b
          channel: RN
          units: uV
          amplitude: [-15, -6]
          epoch: B8 activity
          color: *color-B8
        - name: B6/B9
          channel: BN2
          units: uV
          amplitude: [-30, -20]
          epoch: B3/6/9/10 activity
          color: *color-B6B9
        - name: B3
          channel: BN2
          units: uV
          amplitude: [-80, -30]
          epoch: B3/6/9/10 activity
          color: *color-B3
        - name: B4/B5
          channel: BN3-PROX
          units: uV
          amplitude: [-40, -13]
          epoch: B4/B5 activity
          color: *color-B4B5

    burst_detectors: &burst_detectors-JG14  # used only if fast loading is off (lazy=False)
        - *burst_detectors-B38
        - *burst_detectors-I2
        - *burst_detectors-B8
        - spiketrain: B6/B9
          thresholds: [4, 2] # Hz, both thresholds reduced for this animal because B6/B9 always fired slowly
        - *burst_detectors-B3
        - *burst_detectors-B4B5

Animal 5 Unloaded 2:
    description: 'JG14 2019-07-30 001 [1909, 1943]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 2
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 2
    data_file:          Animal 5 Unloaded 2.axgx
    video_file:         Animal 5 Unloaded 2.mp4
    annotations_file:   Animal 5 Unloaded 2 Annotations.csv
    epoch_encoder_file: Animal 5 Unloaded 2 Epoch Encoder.csv

    video_offset: 1909 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG14

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG14  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG14  # used only if fast loading is off (lazy=False)

Animal 5 Unloaded 3:
    description: 'JG14 2019-07-30 001 [2049, 2084]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 3
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 5 Unloaded 3
    data_file:          Animal 5 Unloaded 3.axgx
    video_file:         Animal 5 Unloaded 3.mp4
    annotations_file:   Animal 5 Unloaded 3 Annotations.csv
    epoch_encoder_file: Animal 5 Unloaded 3 Epoch Encoder.csv

    video_offset: 2049 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG14

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG14  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG14  # used only if fast loading is off (lazy=False)

Animal 5 Loaded 1:
    description: 'JG14 2019-07-29 004 [ 828,  870]'

    data_dir:           Gill-Chiel-eNeuro-2020-data/Animal 5 Loaded 1
    remote_data_dir:    Gill-Chiel-eNeuro-2020-data/Animal 5 Loaded 1
    data_file:          Animal 5 Loaded 1.axgx
    video_file:         Animal 5 Loaded 1.mp4
    annotations_file:   Animal 5 Loaded 1 Annotations.csv
    epoch_encoder_file: Animal 5 Loaded 1 Epoch Encoder.csv

    video_offset: 828 # sec
    epoch_encoder_possible_labels: *epoch_encoder_possible_labels
    plots: *plots-JG14

    filters: *filters  # used only if fast loading is off (lazy=False)
    amplitude_discriminators: *amplitude_discriminators-JG14  # used only if fast loading is off (lazy=False)
    burst_detectors: *burst_detectors-JG14  # used only if fast loading is off (lazy=False)