GFAP_PT_4wks/README.md

GFAP_PT_4wks

Longitudinal MRI (T2-weighted and rs-fMRI) of GFAP-/-/Vim-/- and WT mice; 6 time points over 4 weeks post photothrombotic stroke.

Files:

• MRI_raw_data - contains all raw data in Bruker 2dseq format and the original Bruker folder structure
• MRI_proc_data - contains all data processed with the AIDAmri pipeline. Processing steps: define stroke masks, convert Bruker to NIfTI-1 data format, image re-orientation, bias-field correction, brain extraction, region-of-interest segmentation, registration with the Allen Mouse Brain Atlas (CCFv3), functional connectivity analysis.

Authors:

Markus Aswendt, Ulrika Wilhelmsson, Frederique Wieters, Felix Schmitt, Niklas Pallast, Yolanda de Pablo, Lava Mohammed, Mathias Hoehn, Marcela Pekna, Milos Pekny