CAT-12 container
Docker and Apptainer image for CAT12.
CAT12 8.1 r2042
SPM12, version 7771 (standalone)
MATLAB, version 9.3.0.713579 (R2017b)
Usage notes
Usage: main.py [-h] [--version] bids_dir output_dir {participant,group} {view,copy,segment} ...
BIDS app for CAT12.
Positional Arguments:
bids_dir Fullpath to the directory with the input dataset formatted according to the BIDS standard.
output_dir Fullpath to the directory where the output files will be stored.
{participant,group} Level of the analysis that will be performed. Multiple participant level analyses can be run independently (in parallel)
using the same ``output_dir``.
{view,copy,segment} Choose a sub-command
view View batch.
copy Copy batch to output_dir.
segment segment
Options:
-h, --help show this help message and exit
--version Show program's version number and exit.
Usage: main.py bids_dir output_dir {participant,group} segment [-h]
[--participant_label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]]
[--run RUN [RUN ...]] [-v]
[--bids_filter_file BIDS_FILTER_FILE]
Options:
-h, --help show this help message and exit
--participant_label PARTICIPANT_LABEL [PARTICIPANT_LABEL ...]
The label(s) of the participant(s) that should be analyzed. The label corresponds to sub-<participant_label> from the BIDS
spec (so it does not include "sub-"). If this parameter is not provided, all subjects will be analyzed. Multiple
participants can be specified with a space separated list.
--run RUN [RUN ...] The label of the run that will be analyzed. The label corresponds to run-<task_label> from the BIDS spec so it does not
include "run-").
-v, --verbose
--bids_filter_file BIDS_FILTER_FILE
A JSON file describing custom BIDS input filters using PyBIDS. For further details, please check out TBD.
