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- tests/data/MoAEpilot:
- mkdir -p tests/data
- curl -fL -o moae.zip https://www.fil.ion.ucl.ac.uk/spm/download/data/MoAEpilot/MoAEpilot.bids.zip
- unzip -q moae.zip -d tests/data
- rm -f moae.zip
- build:
- docker build . --tag cat12
- view:
- docker run --rm -it cat12 . . participant view tfce
- copy:
- docker run --rm -it cat12 . /foo participant copy tfce
- segment: tests/data/MoAEpilot
- docker run --rm -it -v $${PWD}/tests/data/MoAEpilot:/data cat12 /data /data/derivatives participant segment
- data_ds000001:
- mkdir -p tests/data
- cd tests/data && datalad install ///openneuro/ds000001
- cd tests/data/ds000001 && datalad get sub*/**/*T1w* -J 12
- ds000001: data_ds000001
- mkdir -p tests/data/outputs
- docker run --rm \
- -v $${PWD}/tests/data:/data \
- cat12 /data/ds000001 /data/outputs/ds000001 participant \
- segment \
- --participant_label 01 02 03 \
- --type simple \
- --verbose 3
- data_ds002799:
- mkdir -p tests/data
- cd tests/data && datalad install ///openneuro/ds002799
- cd tests/data/ds002799 && datalad get sub-2*/*/*/*T1w* -J 12
- ds002799: data_ds002799
- mkdir -p tests/data/outputs
- docker run --rm -it \
- -v $${PWD}/tests/data:/data \
- cat12 /data/ds002799 /data/outputs/ds002799 participant \
- segment \
- --type 2 \
- --participant_label 292 294
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