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- <ngaus>[1 1 2 3 4 2]</ngaus>
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- <uhrlim>1.4</uhrlim>
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- <bids_folder>../derivatives/CAT12.8.1_2040</bids_folder>
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- <species>human</species>
- <APP>1070</APP>
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- <darteltpm>
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- </darteltpm>
- <shootingtpm>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii</item>
- </shootingtpm>
- <shootingT1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii</item>
- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <reduce_mesh>1</reduce_mesh>
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- <thick_measure>1</thick_measure>
- <thick_limit>5</thick_limit>
- <close_parahipp>0</close_parahipp>
- <scale_cortex>0.7</scale_cortex>
- <add_parahipp>0.1</add_parahipp>
- <colormap>BCGWHw</colormap>
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- <verb>2</verb>
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- <expertgui>1</expertgui>
- <subfolders>1</subfolders>
- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
- <td>
- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
- <td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>[false]</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_2737909/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>Desikan</td>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <tr>
- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
- </tr>
- </satlas>
- <LAB>
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- <CT>1</CT>
- <CB>3</CB>
- <BG>5</BG>
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- <ON>11</ON>
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- <VT>15</VT>
- <NV>17</NV>
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- <HI>23</HI>
- <PH>25</PH>
- <LE>27</LE>
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- <shootingtpm>
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- </shootingtpms>
- <templates>
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- </templates>
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- <AMAPframing>1</AMAPframing>
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- <SurfaceEulerNumber>34</SurfaceEulerNumber>
- <SurfaceDefectArea>1.2965172629048</SurfaceDefectArea>
- <SurfaceDefectNumber>18</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0653818100690842</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0796259194612503</SurfacePositionRMSE>
- <res_vx_vol>[1.00000001125458 1.00000001125458 1]</res_vx_vol>
- <res_vx_voli>[1.00000001174206 1.00000001174206 1]</res_vx_voli>
- <res_RMS>1.00000000750305</res_RMS>
- <res_BB>0.000616353587247431</res_BB>
- <tissue_mn>[9.40299987792969 116.83699798584 288.815002441406 385.907012939453]</tissue_mn>
- <tissue_mnr>[0.0243659727275372 0.30275946855545 0.748405694961548 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[7.79716751639004 48.002680530392 35.5711472287177 19.2285095293503]</tissue_std>
- <tissue_stdr>[0.0207093860954046 0.127495795488358 0.094477467238903 0.0510711930692196]</tissue_stdr>
- <contrast>99.5168304443359</contrast>
- <contrastr>0.257877737283707</contrastr>
- <res_ECR>0.185865581035614</res_ECR>
- <NCR>0.127386018633842</NCR>
- <ICR>0.5109001994133</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.00000002250915 2.00000002250915 2]</res_vx_vol>
- <res_RMS>2.0000000150061</res_RMS>
- <res_ECR>1.84625291824341</res_ECR>
- <res_BB>1.00030815601349</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>4.21516704559326</contrastr>
- <NCR>2.15971899032593</NCR>
- <ICR>1.72693502902985</ICR>
- <SurfaceEulerNumber>2.63265306122449</SurfaceEulerNumber>
- <SurfaceDefectArea>1.3241293157262</SurfaceDefectArea>
- <SurfaceDefectNumber>1.9</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.30763626098633</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.59251832962036</SurfacePositionRMSE>
- <SIQR>2.02976455777947</SIQR>
- <IQR>2.09044089443571</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-061301</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>34</SurfaceEulerNumber>
- <SurfaceDefectArea>1.2965172629048</SurfaceDefectArea>
- <SurfaceDefectNumber>18</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0653818100690842</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0796259194612503</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>34</EC_abs>
- <defect_size>1.2965172629048</defect_size>
- <vol_abs_CGW>[370.439757719059 737.811378111164 662.796086153418 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.557180405241754</vol_abs_WMH>
- <vol_rel_WMH>0.000314605053058772</vol_rel_WMH>
- <surf_TSA>2320.3386974515</surf_TSA>
- <vol_TIV>1771.04722198364</vol_TIV>
- <vol_rel_CGW>[0.209164246509561 0.416596107067539 0.3742396464229 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.3169894742195 0.64013563081567]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.3275043964386 0.734350421700542 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.65150107337424 0.2644570851886 0.28292386491883;2.33423745417366 0.18641792257533 0.439664901467141;3.00190091087463 0.269381768956884 0.277411233614029]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.753717183980923 0.223910793045581 0.545709946848899;3.96412276627925 0.370789378377641 0.454290053151101]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>3.66569703316592</vol_TIV>
- <vol_rel_CGW>[1.60639810541596 5.33182663555206 4.57111433949174 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.03146050530588</vol_rel_WMH>
- <surf_TSA>8.62398982222606</surf_TSA>
- <SQR>4.50204034923397</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11534.3362596281 0.439010159148257]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00200520502403378 0.00150473462417722 0.329604148864746]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[924.667613871867 594.436288469617 618.712669431883 361.584745746401 1057.57444444405 8562.70772657785]</SPMvols0>
- <SPMvols1>[770.946171046168 550.706903128945 402.387201606572 354.831490685846 920.307045142012 8535.27640044345]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[143.462799072266 294.826507568359 380.875091552734]</T3th>
- <Tth>
- <T3th>[-6.62033987045288 -6.62034034729004 5.29993867874146 143.462799072266 294.826507568359 380.875091552734 499.581237792969 1265.14282226562]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0205362923443317 0.0770314484834671 0.0850227996706963 0 0]</dtc>
- <ll>[0.0880561575216024 0 0.0880561575216024 0;0.206512158085891 0.0116492989255028 0.218161457011393 2484.18969726562;0.206512158085891 0.0116492989255028 0.218161457011393 2484.18969726562]</ll>
- <rmsdtc>[0.0456318482756615 0.101852633059025 0.114115260541439]</rmsdtc>
- <rmsgdt>[0.0328619107604027 0.0527935810387135 0.065965861082077]</rmsgdt>
- <rmsdt>0.114115260541439</rmsdt>
- <dt>0.0850227996706963</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00895498506724834 0.0398421920835972 0.0494743399322033 0.0586759112775326 0.0656207725405693 0.073343850672245]</dtc>
- <ll>[0.0882451395416438 0 0.0882451395416438 0;0.22383836996337 0.0172418956043956 0.241080265567766 8825.6953125;0.209053890653484 0.0191759809392507 0.228229871592734 13801.18359375;0.187953184586078 0.0210174857607821 0.208970670346861 22662.56640625;0.169763817680022 0.0241847316193473 0.19394854929937 42307.6328125;0.169763817680022 0.0241847316193473 0.19394854929937 42307.6328125]</ll>
- <rmsdtc>[0.0105406558141112 0.0393573082983494 0.0637571662664413 0.0888443142175674 0.11472874879837 0.122016094624996]</rmsdtc>
- <rmsgdt>[0.00345554179511964 0.0136993797495961 0.0308280792087317 0.0530723966658115 0.0733466669917107 0.0797086209058762]</rmsgdt>
- <rmsdt>0.122016094624996</rmsdt>
- <dt>0.073343850672245</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0026005/ses-4/sub-0026005_ses-4_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 58s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 5s</item>
- <item>Initial correction 6s</item>
- <item>Refine background 3s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 5s</item>
- <item>38s</item>
- <item>Correct center-of-mass 3s</item>
- <item>Affine registration 10s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 74s</item>
- <item>SPM preprocessing 1 (estimate 2): 62s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 17s</item>
- <item>Update Segmentation 21s</item>
- <item>Update Skull-Stripping 42s</item>
- <item>Update probability maps 9s</item>
- <item>89s</item>
- <item>Global intensity correction: 17s</item>
- <item>SANLM denoising after intensity normalization (medium): 30s</item>
- <item>Fast Optimized Shooting registration 37s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 5s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.23) 15s</item>
- <item>Estimate local tissue thresholds (WM) 19s</item>
- <item>Estimate local tissue thresholds (GM) 27s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 48s</item>
- <item>121s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 16s</item>
- <item>Blood vessel detection 11s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.19) 28s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 5s</item>
- <item>79s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 31s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>12s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0882 0.0000 0.0882 | 32.0000</item>
- <item>2 | 2.50 | 0.0854 0.0013 0.0866 | 29.4886</item>
- <item>3 | 2.50 | 0.0845 0.0019 0.0864 | 26.9772</item>
- <item>4 | 2.50 | 0.0841 0.0021 0.0863 | 24.6107</item>
- <item>5 | 2.50 | 0.0838 0.0023 0.0861 | 22.6548</item>
- <item>6 | 2.50 | 0.0835 0.0024 0.0859 | 20.6989</item>
- <item>7 | 2.50 | 0.0832 0.0025 0.0857 | 18.9688</item>
- <item>8 | 2.50 | 0.0829 0.0026 0.0855 | 17.4455</item>
- <item>9 | 2.50 | 0.0825 0.0027 0.0852 | 15.9223</item>
- <item>10 | 2.50 | 0.0822 0.0028 0.0850 | 14.6627</item>
- <item>11 | 2.50 | 0.0819 0.0029 0.0847 | 13.4764</item>
- <item>12 | 2.50 | 0.0815 0.0029 0.0845 | 12.3015</item>
- <item>13 | 2.50 | 0.0812 0.0030 0.0842 | 11.3776</item>
- <item>14 | 2.50 | 0.0808 0.0031 0.0839 | 10.4537</item>
- <item>15 | 2.25 | 0.0812 0.0032 0.0844 | 9.5920</item>
- <item>16 | 2.25 | 0.0779 0.0048 0.0827 | 8.8725</item>
- <item>17 | 2.25 | 0.0766 0.0054 0.0820 | 8.1530</item>
- <item>18 | 2.25 | 0.0758 0.0056 0.0814 | 7.5234</item>
- <item>19 | 2.25 | 0.0752 0.0057 0.0809 | 6.9630</item>
- <item>20 | 2.25 | 0.0746 0.0057 0.0804 | 6.4027</item>
- <item>29 | 2.00 | 0.0766 0.0032 0.0798 | 3.3283</item>
- <item>30 | 2.00 | 0.0714 0.0055 0.0770 | 3.1221</item>
- <item>31 | 2.00 | 0.0697 0.0064 0.0761 | 2.9160</item>
- <item>43 | 1.75 | 0.0689 0.0036 0.0725 | 1.5785</item>
- <item>44 | 1.75 | 0.0641 0.0062 0.0703 | 1.5194</item>
- <item>45 | 1.75 | 0.0627 0.0070 0.0697 | 1.4626</item>
- <item>57 | 1.50 | 0.0612 0.0051 0.0663 | 1.0900</item>
- <item>58 | 1.50 | 0.0577 0.0074 0.0651 | 1.0730</item>
- <item>59 | 1.50 | 0.0566 0.0081 0.0646 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 200s</item>
- <item>Prepare output 11s</item>
- <item>210s</item>
- <item>Jacobian determinant (RMS): 0.011 0.039 0.064 0.089 0.115 | 0.122016</item>
- <item>Template Matching: 0.088 0.224 0.209 0.188 0.170 | 0.169764</item>
- <item>Write result maps: 43s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 67s</item>
- <item>CSF distance: 19s</item>
- <item>PBT2x thickness: 56s</item>
- <item>150s</item>
- <item>Create initial surface 97s</item>
- <item>Topology correction: 109s</item>
- <item>Surface refinement: 85s</item>
- <item>Reduction of surface collisions with optimization: 76s</item>
- <item>Spherical mapping with areal smoothing 100s</item>
- <item>Spherical registration 249s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 54s</item>
- <item>CSF distance: 19s</item>
- <item>PBT2x thickness: 56s</item>
- <item>137s</item>
- <item>Create initial surface 95s</item>
- <item>Topology correction: 108s</item>
- <item>Surface refinement: 100s</item>
- <item>Reduction of surface collisions with optimization: 76s</item>
- <item>Spherical mapping with areal smoothing 94s</item>
- <item>Spherical registration 244s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.3170 0.6401 mm</item>
- <item>Surface intensity / position RMSE: 0.0654 / 0.0796</item>
- <item>Euler number / defect number / defect size: 34.0 / 18.0 / 1.30%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/surf/lh.thickness.sub-0026005_ses-4_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/surf/rh.thickness.sub-0026005_ses-4_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/sub-0026005_ses-4_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 8s</item>
- <item>Surface and thickness estimation takes: 1828s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 14s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 51s</item>
- <item>ROI estimation of 'lpba40' atlas 15s</item>
- <item>ROI estimation of 'hammers' atlas 36s</item>
- <item>ROI estimation of 'thalamus' atlas 3s</item>
- <item>ROI estimation of 'ibsr' atlas 13s</item>
- <item>ROI estimation of 'aal3' atlas 21s</item>
- <item>ROI estimation of 'mori' atlas 31s</item>
- <item>ROI estimation of 'anatomy3' atlas 45s</item>
- <item>ROI estimation of 'julichbrain' atlas 59s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 95s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 142s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 10s</item>
- <item>Write results 11s</item>
- <item>584s</item>
- <item>Quality check: 13s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/report/catreport_sub-0026005_ses-4_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 57 minute(s) and 34 second(s).</item>
- <item>Image Quality Rating (IQR): 84.10% (B)</item>
- <item>GM volume (GMV): 41.66% (737.81 / 1771.05 ml)</item>
- <item>GM thickness (GMT): 2.32 0.64 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|