[0.971751882748938 0.0488163554678456 0.00118228687163252 -5.94079670923757;-0.0513135283263204 1.01357148392381 0.109090316453668 -39.7585718245358;0.00989166781191786 -0.0878115143706674 1.0702610314886 -4.847466605666;0 0 0 1] [0.971751882748938 0.0488163554678456 0.00118228687163252 -5.94079670923757;-0.0513135283263204 1.01357148392381 0.109090316453668 -39.7585718245358;0.00989166781191786 -0.0878115143706674 1.0702610314886 -4.847466605666;0 0 0 1] [1 2 3 3 4 4 4 5 5 5 5 6 6] [304.204028143939 380.871192766678 125.811505369846 206.138845623506 384.382503578044 58.7312570733851 152.509090568314 318.335473657977 687.033621916352 470.751612406488 317.157302068888 119.526352797662 21.6300290707341] [1180.44212679104;184.842365845517;316.949131932675;2178.74279144347;10614.9676651783;654.084816999936;2577.63066848607;9900.99677589944;10235.8441090303;15625.6523483914;2142.67563777292;3551.27286501853;128.268276522676] -5.68324518203735 [-5.94079670923757 -39.7585718245358 -4.847466605666] [0.0866871805657468 -0.0055691302450773 0.0534364456439218] [0.973156022900492 1.01852333783207 1.07566384814193] [-0.00574546830642983 0.0064810300664039 0.0160812949149372] [-5.94079670923757 -39.7585718245358 -4.847466605666] [0.0866871805657468 -0.0055691302450773 0.0534364456439218] [0.973156022900492 1.01852333783207 1.07566384814193] [-0.00574546830642983 0.0064810300664039 0.0160812949149372] /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4 sub-0026005_ses-4_run-1_T1w /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/sub-0026005_ses-4_run-1_T1w.nii /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/sub-0026005_ses-4_run-1_T1w.nii /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/mri/msub-0026005_ses-4_run-1_T1w.nii /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/mri/p0sub-0026005_ses-4_run-1_T1w.nii ../XHCUMS/sub-0026005/ses-4/sub-0026005_ses-4_run-1_T1w /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/tpm/TPM.nii [1 1 2 3 4 2] mni [0 0.001 0.5 0.05 0.2] 0.0001 0.5 0.5 0.001 60 3 0 1 0 1.4 2 0.5 0 -Inf 0.5 0.5 0.5 2 0.5 0 1 optimal [1 0.3] ../derivatives/CAT12.8.1_2040 0 1 human 1070 1 1.5 12 Template_T1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/brainmask.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii 0.5 22 1 2 0 1 5 0 0.7 0.1 BCGWHw 2 1 1 1 0 2 10 1 1 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/neuromorphometrics.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii 0 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii 0 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii 0 csf gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii 1 gm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii 1 gm wm [false] /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii 1 gm wm [false] /var/lib/condor/execute/dir_2737909/ds/code/Tian_Subcortex_S2_7T.nii 1 gm wm csf [false] Desikan /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_a2009s.freesurfer.annot 0 1 Destrieux /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot 0 1 HCP /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_HCP_MMP1.freesurfer.annot 0 0 Schaefer2018_100P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot 1 0 Schaefer2018_200P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot 0 0 Schaefer2018_400P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot 1 0 Schaefer2018_600P_17N /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot 1 0 0 1 3 5 7 9 11 13 13 15 17 19 21 23 25 27 0 0 0 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii 0.5 [1 0.3] 0 pbt2x /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_5_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_6_Dartel.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_1_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_2_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_3_GS.nii /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_4_GS.nii 0 1 1639 34 1.2965172629048 18 0.0653818100690842 0.0796259194612503 [1.00000001125458 1.00000001125458 1] [1.00000001174206 1.00000001174206 1] 1.00000000750305 0.000616353587247431 [9.40299987792969 116.83699798584 288.815002441406 385.907012939453] [0.0243659727275372 0.30275946855545 0.748405694961548 1] T1 [7.79716751639004 48.002680530392 35.5711472287177 19.2285095293503] [0.0207093860954046 0.127495795488358 0.094477467238903 0.0510711930692196] 99.5168304443359 0.257877737283707 0.185865581035614 0.127386018633842 0.5109001994133 [2.00000002250915 2.00000002250915 2] 2.0000000150061 1.84625291824341 1.00030815601349 [8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641] [8.624 8.624 8.624 8.624] 0.5 4.21516704559326 2.15971899032593 1.72693502902985 2.63265306122449 1.3241293157262 1.9 1.30763626098633 1.59251832962036 2.02976455777947 2.09044089443571 voxel dimensions RMS error of voxel size normalized gradient slope of the white matter boundary brain next to the image boundary mean within the tissue classes standard deviation within the tissue classes contrast between tissue classes contrast between tissue classes noise to contrast ratio inhomogeneity to contrast ratio average Euler number (characteristic) average area of topological defects average number of defects RMSE of the expected boundary intensity Ym of the IS, OS, and CS RMSE of the expected boundary position Ypp of the IS, OS, and CS Percentual area of self-intersections of the IS and OS. total intracranial volume (GM+WM+VT) relative tissue volume (CSF,GM,WM) relative WMH volume total surface area 1639 LINUX 7771 9.3 12.8.1 2040 /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m /code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m cat12 20231031-061301 1639 1639 34 1.2965172629048 18 0.0653818100690842 0.0796259194612503 34 1.2965172629048 [370.439757719059 737.811378111164 662.796086153418 0 0] 0.557180405241754 0.000314605053058772 2320.3386974515 1771.04722198364 [0.209164246509561 0.416596107067539 0.3742396464229 0 0] [2.3169894742195 0.64013563081567] [2.3275043964386 0.734350421700542 1] [1.65150107337424 0.2644570851886 0.28292386491883;2.33423745417366 0.18641792257533 0.439664901467141;3.00190091087463 0.269381768956884 0.277411233614029] [0.753717183980923 0.223910793045581 0.545709946848899;3.96412276627925 0.370789378377641 0.454290053151101] 3.66569703316592 [1.60639810541596 5.33182663555206 4.57111433949174 0.5 0.5] 1.03146050530588 8.62398982222606 4.50204034923397 [0 1 0 11534.3362596281 0.439010159148257] [false] [0.00200520502403378 0.00150473462417722 0.329604148864746] [false] [924.667613871867 594.436288469617 618.712669431883 361.584745746401 1057.57444444405 8562.70772657785] [770.946171046168 550.706903128945 402.387201606572 354.831490685846 920.307045142012 8535.27640044345] [143.462799072266 294.826507568359 380.875091552734] [-6.62033987045288 -6.62034034729004 5.29993867874146 143.462799072266 294.826507568359 380.875091552734 499.581237792969 1265.14282226562] [0 0.02 0.05 1 2 3 4 5] 16 1.5 3 0.5 [1 1 1 1 1] 0.015 [0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03] 15 0 2 1 Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0 [0.0205362923443317 0.0770314484834671 0.0850227996706963 0 0] [0.0880561575216024 0 0.0880561575216024 0;0.206512158085891 0.0116492989255028 0.218161457011393 2484.18969726562;0.206512158085891 0.0116492989255028 0.218161457011393 2484.18969726562] [0.0456318482756615 0.101852633059025 0.114115260541439] [0.0328619107604027 0.0527935810387135 0.065965861082077] 0.114115260541439

0.0850227996706963

64 1.5 1.5 0.25 [1.66666666666667 1.5 1.33333333333333 1.16666666666667 1] 0.051 [0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501] 0.5 0 2 1 Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5 [0.00895498506724834 0.0398421920835972 0.0494743399322033 0.0586759112775326 0.0656207725405693 0.073343850672245] [0.0882451395416438 0 0.0882451395416438 0;0.22383836996337 0.0172418956043956 0.241080265567766 8825.6953125;0.209053890653484 0.0191759809392507 0.228229871592734 13801.18359375;0.187953184586078 0.0210174857607821 0.208970670346861 22662.56640625;0.169763817680022 0.0241847316193473 0.19394854929937 42307.6328125;0.169763817680022 0.0241847316193473 0.19394854929937 42307.6328125] [0.0105406558141112 0.0393573082983494 0.0637571662664413 0.0888443142175674 0.11472874879837 0.122016094624996] [0.00345554179511964 0.0136993797495961 0.0308280792087317 0.0530723966658115 0.0733466669917107 0.0797086209058762] 0.122016094624996

0.073343850672245

------------------------------------------------------------------------ CAT12.8.1 r2040: 1/1: ./sub-0026005/ses-4/sub-0026005_ses-4_run-1_T1w.n ------------------------------------------------------------------------ SANLM denoising (medium): 58s APP: Rough bias correction: Initialize 7s Estimate background 5s Initial correction 6s Refine background 3s Final correction 6s Final scaling 5s 38s Correct center-of-mass 3s Affine registration 10s SPM preprocessing 1 (estimate 1 - TPM registration): 74s SPM preprocessing 1 (estimate 2): 62s SPM preprocessing 2 (write): Write Segmentation 17s Update Segmentation 21s Update Skull-Stripping 42s Update probability maps 9s 89s Global intensity correction: 17s SANLM denoising after intensity normalization (medium): 30s Fast Optimized Shooting registration 37s Local adaptive segmentation (LASstr=0.50): Prepare maps 5s Prepare partitions 3s Prepare segments (LASmod = 1.23) 15s Estimate local tissue thresholds (WM) 19s Estimate local tissue thresholds (GM) 27s Intensity transformation 0s SANLM denoising after LAS (medium) 48s 121s ROI segmentation (partitioning): Atlas -> subject space 9s Major structures 4s Ventricle detection 16s Blood vessel detection 11s WMH detection (WMHCstr=0.50 > WMHCstr'=0.19) 28s Manual stroke lesion detection 0s Closing of deep structures 2s Side alignment 4s Final corrections 5s 79s Blood vessel correction (BVCstr=0.50): 2s Amap using initial SPM12 segmentations (MRF filter strength 0.06): 31s AMAP peaks: [CSF,GM,WM] = [0.36 0.06,0.68 0.08,0.98 0.05] Final cleanup (gcutstr=0.25): Level 1 cleanup (ROI estimation) 5s Level 1 cleanup (brain masking) 3s Level 2 cleanup (CSF correction) 2s Level 3 cleanup (CSF/WM PVE) 3s 12s Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50): Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii" 1 | 2.50 | 0.0882 0.0000 0.0882 | 32.0000 2 | 2.50 | 0.0854 0.0013 0.0866 | 29.4886 3 | 2.50 | 0.0845 0.0019 0.0864 | 26.9772 4 | 2.50 | 0.0841 0.0021 0.0863 | 24.6107 5 | 2.50 | 0.0838 0.0023 0.0861 | 22.6548 6 | 2.50 | 0.0835 0.0024 0.0859 | 20.6989 7 | 2.50 | 0.0832 0.0025 0.0857 | 18.9688 8 | 2.50 | 0.0829 0.0026 0.0855 | 17.4455 9 | 2.50 | 0.0825 0.0027 0.0852 | 15.9223 10 | 2.50 | 0.0822 0.0028 0.0850 | 14.6627 11 | 2.50 | 0.0819 0.0029 0.0847 | 13.4764 12 | 2.50 | 0.0815 0.0029 0.0845 | 12.3015 13 | 2.50 | 0.0812 0.0030 0.0842 | 11.3776 14 | 2.50 | 0.0808 0.0031 0.0839 | 10.4537 15 | 2.25 | 0.0812 0.0032 0.0844 | 9.5920 16 | 2.25 | 0.0779 0.0048 0.0827 | 8.8725 17 | 2.25 | 0.0766 0.0054 0.0820 | 8.1530 18 | 2.25 | 0.0758 0.0056 0.0814 | 7.5234 19 | 2.25 | 0.0752 0.0057 0.0809 | 6.9630 20 | 2.25 | 0.0746 0.0057 0.0804 | 6.4027 29 | 2.00 | 0.0766 0.0032 0.0798 | 3.3283 30 | 2.00 | 0.0714 0.0055 0.0770 | 3.1221 31 | 2.00 | 0.0697 0.0064 0.0761 | 2.9160 43 | 1.75 | 0.0689 0.0036 0.0725 | 1.5785 44 | 1.75 | 0.0641 0.0062 0.0703 | 1.5194 45 | 1.75 | 0.0627 0.0070 0.0697 | 1.4626 57 | 1.50 | 0.0612 0.0051 0.0663 | 1.0900 58 | 1.50 | 0.0577 0.0074 0.0651 | 1.0730 59 | 1.50 | 0.0566 0.0081 0.0646 | 1.0579 Shooting registration with 2.50:-0.25:1.50 mm takes: 200s Prepare output 11s 210s Jacobian determinant (RMS): 0.011 0.039 0.064 0.089 0.115 | 0.122016 Template Matching: 0.088 0.224 0.209 0.188 0.170 | 0.169764 Write result maps: 43s Surface and thickness estimation: lh: Thickness estimation (0.50 mm ): WM distance: 67s CSF distance: 19s PBT2x thickness: 56s 150s Create initial surface 97s Topology correction: 109s Surface refinement: 85s Reduction of surface collisions with optimization: 76s Spherical mapping with areal smoothing 100s Spherical registration 249s rh: Thickness estimation (0.50 mm ): WM distance: 54s CSF distance: 19s PBT2x thickness: 56s 137s Create initial surface 95s Topology correction: 108s Surface refinement: 100s Reduction of surface collisions with optimization: 76s Spherical mapping with areal smoothing 94s Spherical registration 244s Final surface processing results: Average thickness (FS): 2.3170 0.6401 mm Surface intensity / position RMSE: 0.0654 / 0.0796 Euler number / defect number / defect size: 34.0 / 18.0 / 1.30% Display thickness: /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/surf/lh.thickness.sub-0026005_ses-4_run-1_T1w Display thickness: /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/surf/rh.thickness.sub-0026005_ses-4_run-1_T1w Show surfaces in orthview: /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/sub-0026005_ses-4_run-1_T1w.nii Surface ROI estimation: 8s Surface and thickness estimation takes: 1828s ROI estimation in native space: ROI estimation of 'cobra' atlas 14s ROI estimation of 'neuromorphometrics' atlas 51s ROI estimation of 'lpba40' atlas 15s ROI estimation of 'hammers' atlas 36s ROI estimation of 'thalamus' atlas 3s ROI estimation of 'ibsr' atlas 13s ROI estimation of 'aal3' atlas 21s ROI estimation of 'mori' atlas 31s ROI estimation of 'anatomy3' atlas 45s ROI estimation of 'julichbrain' atlas 59s ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 29s ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 95s ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 142s ROI estimation of 'Tian_Subcortex_S2_7T' atlas 10s Write results 11s 584s Quality check: 13s Print 'Graphics' figure to: /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/report/catreport_sub-0026005_ses-4_run-1_T1w.pdf ------------------------------------------------------------------------ CAT preprocessing takes 57 minute(s) and 34 second(s). Image Quality Rating (IQR): 84.10% (B) GM volume (GMV): 41.66% (737.81 / 1771.05 ml) GM thickness (GMT): 2.32 0.64 mm Segmentations are saved in /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/mri Reports are saved in /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/report Labels are saved in /var/lib/condor/execute/dir_2737909/ds/XHCUMS/sub-0026005/ses-4/label ------------------------------------------------------------------------