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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
- <APP>1070</APP>
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- <darteltpm>
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- <shootingtpm>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
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- <expertgui>1</expertgui>
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- <experimental>0</experimental>
- <print>2</print>
- <fontsize>10</fontsize>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <td>
- <item>gm</item>
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- <td>[false]</td>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_2997985/ds/code/Tian_Subcortex_S2_7T.nii</td>
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- <item>gm</item>
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- <td>0</td>
- <td>1</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_100Parcels_17Networks_order.annot</td>
- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- </satlas>
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- </shootingtpms>
- <templates>
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- <SurfaceEulerNumber>16</SurfaceEulerNumber>
- <SurfaceDefectArea>0.640772475826192</SurfaceDefectArea>
- <SurfaceDefectNumber>11.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0684996098279953</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0703496709465981</SurfacePositionRMSE>
- <res_vx_vol>[1.33000004291534 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1.12084791031237</res_RMS>
- <res_BB>NaN</res_BB>
- <tissue_mn>[5.41599988937378 30.6650009155273 177.595001220703 317.81298828125]</tissue_mn>
- <tissue_mnr>[0.0170414689928293 0.0964875668287277 0.558803498744965 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[2.76791375828052 31.4959394780536 37.5431495922958 26.4391215100552]</tissue_std>
- <tissue_stdr>[0.00886024441570044 0.100820235908031 0.120177686214447 0.084633082151413]</tissue_stdr>
- <contrast>109.189178466797</contrast>
- <contrastr>0.343564242124557</contrastr>
- <res_ECR>0.415212869644165</res_ECR>
- <NCR>0.151715636253357</NCR>
- <ICR>0.34941291809082</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.66000008583069 2 2]</res_vx_vol>
- <res_RMS>2.24169582062474</res_RMS>
- <res_ECR>3.01639223098755</res_ECR>
- <res_BB>NaN</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.92986965179443</contrastr>
- <NCR>2.50898122787476</NCR>
- <ICR>1.32642090320587</ICR>
- <SurfaceEulerNumber>1.71428571428571</SurfaceEulerNumber>
- <SurfaceDefectArea>1.16019311895655</SurfaceDefectArea>
- <SurfaceDefectNumber>1.575</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.36999225616455</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.40699338912964</SurfacePositionRMSE>
- <SIQR>2.72275660307828</SIQR>
- <IQR>2.40088153129085</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-010450</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>16</SurfaceEulerNumber>
- <SurfaceDefectArea>0.640772475826192</SurfaceDefectArea>
- <SurfaceDefectNumber>11.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.0684996098279953</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0703496709465981</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>16</EC_abs>
- <defect_size>0.640772475826192</defect_size>
- <vol_abs_CGW>[180.929066666667 673.050901960784 472.436129411765 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.548027450980392</vol_abs_WMH>
- <vol_rel_WMH>0.000413164052962353</vol_rel_WMH>
- <surf_TSA>1855.57146681018</surf_TSA>
- <vol_TIV>1326.41609803922</vol_TIV>
- <vol_rel_CGW>[0.13640445628949 0.50742063742722 0.35617490628329 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.54985082194539 0.627725447503299]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.53649139404297 0.742542840658241 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.960231380301 0.239215413257032 0.311209095692601;2.56964305608572 0.178851378949775 0.408573502867381;3.22969814755916 0.266516448177082 0.280217401440018]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.917804889815156 0.336336939404371 0.5349017329848;4.16132593015945 0.344083097585189 0.4650982670152]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.1279173508673</vol_TIV>
- <vol_rel_CGW>[0.5 6.96301432160955 4.24667575939817 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.04131640529624</vol_rel_WMH>
- <surf_TSA>8.6047248756219</surf_TSA>
- <SQR>5.70762510260023</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11156.849 0.409575023145769]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00197940459474921 0.00170558248646557 0.0259159710258245]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[830.310270588235 394.77477254902 285.059949019608 612.242749019608 932.020596078431 8514.35221568627]</SPMvols0>
- <SPMvols1>[742.792337254902 371.945976470588 157.77368627451 450.229019607843 811.149941176471 8607.2716627451]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[44.6945991516113 200.922103881836 328.856811523438]</T3th>
- <Tth>
- <T3th>[-51.4443397521973 -51.4443359375 -3.37486839294434 44.6945991516113 200.922103881836 328.856811523438 470.937927246094 632.143005371094]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0205197036266327 0.0727338492870331 0.0801205486059189 0 0]</dtc>
- <ll>[0.0801764858775541 0 0.0801764858775541 0;0.186685349188504 0.00930075914490552 0.195986108333409 1983.36828613281;0.186685349188504 0.00930075914490552 0.195986108333409 1983.36828613281]</ll>
- <rmsdtc>[0.0451177433133125 0.0965077206492424 0.106325395405293]</rmsdtc>
- <rmsgdt>[0.032190028578043 0.0422707796096802 0.0517642125487328]</rmsgdt>
- <rmsdt>0.106325395405293</rmsdt>
- <dt>0.0801205486059189</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.00949102453887463 0.0348047912120819 0.0485503934323788 0.0555432178080082 0.0599097684025764 0.0667606890201569]</dtc>
- <ll>[0.081437169924857 0 0.081437169924857 0;0.211721611721612 0.012674803495116 0.224396415216728 6487.9150390625;0.190175636226713 0.0150945482902362 0.205270184516949 10863.7275390625;0.17144614542991 0.0166210960685245 0.188067241498435 17922.0625;0.15862073363695 0.0173235844641562 0.175944318101107 30305.064453125;0.15862073363695 0.0173235844641562 0.175944318101107 30305.064453125]</ll>
- <rmsdtc>[0.0112299481406808 0.041060671210289 0.0603853315114975 0.0827386900782585 0.102912619709969 0.107281982898712]</rmsdtc>
- <rmsgdt>[0.00319246668368578 0.0122796408832073 0.0258101243525743 0.044703334569931 0.0616708882153034 0.065757229924202]</rmsgdt>
- <rmsdt>0.107281982898712</rmsdt>
- <dt>0.0667606890201569</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025978/ses-1/sub-0025978_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 33s</item>
- <item>Internal resampling (1.33x1.00x1.00mm > 1.00x1.00x1.00mm): 1s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 6s</item>
- <item>Estimate background 5s</item>
- <item>Initial correction 5s</item>
- <item>Refine background 3s</item>
- <item>Final correction 4s</item>
- <item>Final scaling 4s</item>
- <item>34s</item>
- <item>Correct center-of-mass 4s</item>
- <item>Affine registration 8s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 71s</item>
- <item>SPM preprocessing 1 (estimate 2): 57s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 15s</item>
- <item>Update Segmentation 16s</item>
- <item>Update Skull-Stripping 38s</item>
- <item>Update probability maps 8s</item>
- <item>78s</item>
- <item>Global intensity correction: 15s</item>
- <item>SANLM denoising after intensity normalization (medium): 23s</item>
- <item>Fast Optimized Shooting registration 32s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 3s</item>
- <item>Prepare partitions 2s</item>
- <item>Prepare segments (LASmod = 1.00) 12s</item>
- <item>Estimate local tissue thresholds (WM) 17s</item>
- <item>Estimate local tissue thresholds (GM) 25s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 38s</item>
- <item>101s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 7s</item>
- <item>Major structures 3s</item>
- <item>Ventricle detection 14s</item>
- <item>Blood vessel detection 8s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 21s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 1s</item>
- <item>Side alignment 3s</item>
- <item>Final corrections 4s</item>
- <item>62s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 30s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.67 0.08,0.98 0.05]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 4s</item>
- <item>Level 1 cleanup (brain masking) 3s</item>
- <item>Level 2 cleanup (CSF correction) 1s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>11s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0814 0.0000 0.0814 | 32.0000</item>
- <item>2 | 2.50 | 0.0791 0.0011 0.0802 | 29.4886</item>
- <item>3 | 2.50 | 0.0784 0.0017 0.0801 | 26.9772</item>
- <item>4 | 2.50 | 0.0780 0.0019 0.0799 | 24.6107</item>
- <item>5 | 2.50 | 0.0778 0.0020 0.0798 | 22.6548</item>
- <item>6 | 2.50 | 0.0775 0.0021 0.0796 | 20.6989</item>
- <item>7 | 2.50 | 0.0772 0.0022 0.0795 | 18.9688</item>
- <item>8 | 2.50 | 0.0770 0.0023 0.0793 | 17.4455</item>
- <item>9 | 2.50 | 0.0767 0.0024 0.0791 | 15.9223</item>
- <item>10 | 2.50 | 0.0764 0.0025 0.0789 | 14.6627</item>
- <item>11 | 2.50 | 0.0761 0.0026 0.0787 | 13.4764</item>
- <item>12 | 2.50 | 0.0758 0.0026 0.0785 | 12.3015</item>
- <item>13 | 2.50 | 0.0755 0.0027 0.0782 | 11.3776</item>
- <item>14 | 2.50 | 0.0752 0.0028 0.0780 | 10.4537</item>
- <item>15 | 2.25 | 0.0732 0.0029 0.0761 | 9.5920</item>
- <item>16 | 2.25 | 0.0706 0.0042 0.0748 | 8.8725</item>
- <item>29 | 2.00 | 0.0709 0.0019 0.0728 | 3.3283</item>
- <item>30 | 2.00 | 0.0653 0.0041 0.0694 | 3.1221</item>
- <item>31 | 2.00 | 0.0634 0.0050 0.0684 | 2.9160</item>
- <item>43 | 1.75 | 0.0621 0.0029 0.0650 | 1.5785</item>
- <item>44 | 1.75 | 0.0584 0.0049 0.0632 | 1.5194</item>
- <item>45 | 1.75 | 0.0571 0.0055 0.0627 | 1.4626</item>
- <item>57 | 1.50 | 0.0556 0.0040 0.0596 | 1.0900</item>
- <item>58 | 1.50 | 0.0529 0.0058 0.0586 | 1.0730</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 147s</item>
- <item>Prepare output 10s</item>
- <item>157s</item>
- <item>Jacobian determinant (RMS): 0.011 0.041 0.060 0.083 0.103 | 0.107282</item>
- <item>Template Matching: 0.081 0.212 0.190 0.171 0.159 | 0.158621</item>
- <item>Write result maps: 55s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 25s</item>
- <item>CSF distance: 14s</item>
- <item>PBT2x thickness: 42s</item>
- <item>88s</item>
- <item>Create initial surface 83s</item>
- <item>Topology correction: 94s</item>
- <item>Surface refinement: 79s</item>
- <item>Reduction of surface collisions with optimization: 66s</item>
- <item>Spherical mapping with areal smoothing 87s</item>
- <item>Spherical registration 299s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 24s</item>
- <item>CSF distance: 13s</item>
- <item>PBT2x thickness: 41s</item>
- <item>85s</item>
- <item>Create initial surface 81s</item>
- <item>Topology correction: 88s</item>
- <item>Surface refinement: 94s</item>
- <item>Reduction of surface collisions with optimization: 65s</item>
- <item>Spherical mapping with areal smoothing 77s</item>
- <item>Spherical registration 299s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5498 0.6277 mm</item>
- <item>Surface intensity / position RMSE: 0.0685 / 0.0703</item>
- <item>Euler number / defect number / defect size: 16.0 / 11.5 / 0.64%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2997985/ds/BNU_2/sub-0025978/ses-1/surf/lh.thickness.sub-0025978_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_2997985/ds/BNU_2/sub-0025978/ses-1/surf/rh.thickness.sub-0025978_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_2997985/ds/BNU_2/sub-0025978/ses-1/sub-0025978_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 8s</item>
- <item>Surface and thickness estimation takes: 1678s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 8s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 29s</item>
- <item>ROI estimation of 'lpba40' atlas 8s</item>
- <item>ROI estimation of 'hammers' atlas 20s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 7s</item>
- <item>ROI estimation of 'aal3' atlas 12s</item>
- <item>ROI estimation of 'mori' atlas 17s</item>
- <item>ROI estimation of 'anatomy3' atlas 25s</item>
- <item>ROI estimation of 'julichbrain' atlas 33s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 13s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 23s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 52s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 78s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 7s</item>
- <item>Write results 8s</item>
- <item>335s</item>
- <item>Quality check: 10s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_2997985/ds/BNU_2/sub-0025978/ses-1/report/catreport_sub-0025978_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 47 minute(s) and 46 second(s).</item>
- <item>Image Quality Rating (IQR): 80.99% (B-)</item>
- <item>GM volume (GMV): 50.74% (673.05 / 1326.42 ml)</item>
- <item>GM thickness (GMT): 2.55 0.63 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_2997985/ds/BNU_2/sub-0025978/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_2997985/ds/BNU_2/sub-0025978/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_2997985/ds/BNU_2/sub-0025978/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|