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- <uhrlim>1.4</uhrlim>
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- <species>human</species>
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- <darteltpm>
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- <shootingtpm>
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- </shootingtpm>
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- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_T1_masked.nii</item>
- </shootingT1>
- <brainmask>
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- </brainmask>
- <T1>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/T1.nii</item>
- </T1>
- <cat12atlas>
- <item>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cat.nii</item>
- </cat12atlas>
- <pbtres>0.5</pbtres>
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- <print>2</print>
- <fontsize>10</fontsize>
- <send_info>1</send_info>
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- <tr>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/lpba40.nii</td>
- <td>0</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/cobra.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/hammers.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/thalamus.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/suit.nii</td>
- <td>0</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/ibsr.nii</td>
- <td>0</td>
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- <item>csf</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/aal3.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/mori.nii</td>
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- <item>gm</item>
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- <tr>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/anatomy3.nii</td>
- <td>1</td>
- <td>
- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/julichbrain.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_100Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_200Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <item>gm</item>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_400Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Schaefer2018_600Parcels_17Networks_order.nii</td>
- <td>1</td>
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- <td>/var/lib/condor/execute/dir_3318795/ds/code/Tian_Subcortex_S2_7T.nii</td>
- <td>1</td>
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- <td>0</td>
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- <td>Destrieux</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.aparc_DK40.freesurfer.annot</td>
- <td>0</td>
- <td>1</td>
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- <tr>
- <td>HCP</td>
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- <td>0</td>
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- <td>Schaefer2018_100P_17N</td>
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- <td>1</td>
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- <td>Schaefer2018_200P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_200Parcels_17Networks_order.annot</td>
- <td>0</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_400P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_400Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- <tr>
- <td>Schaefer2018_600P_17N</td>
- <td>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/atlases_surfaces/lh.Schaefer2018_600Parcels_17Networks_order.annot</td>
- <td>1</td>
- <td>0</td>
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- </satlas>
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- </shootingtpms>
- <templates>
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- <SurfaceEulerNumber>40</SurfaceEulerNumber>
- <SurfaceDefectArea>1.43782265412183</SurfaceDefectArea>
- <SurfaceDefectNumber>20.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.071378767490387</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0857618302106857</SurfacePositionRMSE>
- <res_vx_vol>[1.33000004291534 1 1]</res_vx_vol>
- <res_vx_voli>[1 1 1]</res_vx_voli>
- <res_RMS>1.12084791031237</res_RMS>
- <res_BB>NaN</res_BB>
- <tissue_mn>[5.23400020599365 33.439998626709 201.634002685547 361.183013916016]</tissue_mn>
- <tissue_mnr>[0.014491269364953 0.092584639787674 0.558259904384613 1]</tissue_mnr>
- <tissue_weighting>T1</tissue_weighting>
- <tissue_std>[3.76128313542617 38.5986454189832 43.0841496676194 28.0504596834236]</tissue_std>
- <tissue_stdr>[0.0105669153854251 0.108438692986965 0.121040232479572 0.0788047164678574]</tissue_stdr>
- <contrast>124.133628845215</contrast>
- <contrastr>0.34368622303009</contrastr>
- <res_ECR>0.410881638526917</res_ECR>
- <NCR>0.144581243395805</NCR>
- <ICR>0.386145114898682</ICR>
- </qualitymeasures>
- <qualityratings>
- <res_vx_vol>[2.66000008583069 2 2]</res_vx_vol>
- <res_RMS>2.24169582062474</res_RMS>
- <res_ECR>2.99429416656494</res_ECR>
- <res_BB>NaN</res_BB>
- <tissue_mn>[8.62400054931641 8.62400054931641 8.62400054931641 8.62400054931641]</tissue_mn>
- <tissue_std>[8.624 8.624 8.624 8.624]</tissue_std>
- <contrast>0.5</contrast>
- <contrastr>2.92804002761841</contrastr>
- <NCR>2.40656399726868</NCR>
- <ICR>1.4175226688385</ICR>
- <SurfaceEulerNumber>2.93877551020408</SurfaceEulerNumber>
- <SurfaceDefectArea>1.35945566353046</SurfaceDefectArea>
- <SurfaceDefectNumber>2.025</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>1.42757534980774</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>1.71523666381836</SurfacePositionRMSE>
- <SIQR>2.68998078063778</SIQR>
- <IQR>2.33424025997911</IQR>
- </qualityratings>
- <ratings_help>
- <qualitymeasures>
- <res_vx_vol>voxel dimensions</res_vx_vol>
- <res_RMS>RMS error of voxel size</res_RMS>
- <res_ECR>normalized gradient slope of the white matter boundary</res_ECR>
- <res_BB>brain next to the image boundary</res_BB>
- <tissue_mn>mean within the tissue classes</tissue_mn>
- <tissue_std>standard deviation within the tissue classes</tissue_std>
- <contrast>contrast between tissue classes</contrast>
- <contrastr>contrast between tissue classes</contrastr>
- <NCR>noise to contrast ratio</NCR>
- <ICR>inhomogeneity to contrast ratio</ICR>
- <SurfaceEulerNumber>average Euler number (characteristic)</SurfaceEulerNumber>
- <SurfaceDefectArea>average area of topological defects</SurfaceDefectArea>
- <SurfaceDefectNumber>average number of defects</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>RMSE of the expected boundary intensity Ym of the IS, OS, and CS</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>RMSE of the expected boundary position Ypp of the IS, OS, and CS</SurfacePositionRMSE>
- <SurfaceSelfIntersections>Percentual area of self-intersections of the IS and OS.</SurfaceSelfIntersections>
- </qualitymeasures>
- <subjectmeasures>
- <vol_TIV>total intracranial volume (GM+WM+VT)</vol_TIV>
- <vol_rel_CGW>relative tissue volume (CSF,GM,WM)</vol_rel_CGW>
- <vol_rel_WMH>relative WMH volume</vol_rel_WMH>
- <surf_TSA>total surface area</surf_TSA>
- </subjectmeasures>
- </ratings_help>
- <software>
- <version_segment>1639</version_segment>
- <system>LINUX</system>
- <version_spm>7771</version_spm>
- <version_matlab>9.3</version_matlab>
- <version_cat>12.8.1</version_cat>
- <revision_cat>2040</revision_cat>
- <function>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_vol_qa.m</function>
- <markdefs>/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/cat_stat_marks.m</markdefs>
- <qamethod>cat12</qamethod>
- <date>20231031-005018</date>
- </software>
- <subjectmeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <qualitymeasures>
- <software>
- <version_segment>1639</version_segment>
- </software>
- <SurfaceEulerNumber>40</SurfaceEulerNumber>
- <SurfaceDefectArea>1.43782265412183</SurfaceDefectArea>
- <SurfaceDefectNumber>20.5</SurfaceDefectNumber>
- <SurfaceIntensityRMSE>0.071378767490387</SurfaceIntensityRMSE>
- <SurfacePositionRMSE>0.0857618302106857</SurfacePositionRMSE>
- </qualitymeasures>
- <EC_abs>40</EC_abs>
- <defect_size>1.43782265412183</defect_size>
- <vol_abs_CGW>[177.66568627451 781.729560784314 611.90771372549 0 0]</vol_abs_CGW>
- <vol_abs_WMH>0.790905882352941</vol_abs_WMH>
- <vol_rel_WMH>0.000503343977636344</vol_rel_WMH>
- <surf_TSA>2188.74471928726</surf_TSA>
- <vol_TIV>1571.30296078431</vol_TIV>
- <vol_rel_CGW>[0.113069020238992 0.497504033464122 0.389426946296886 0 0]</vol_rel_CGW>
- <dist_thickness>
- <item>[2.51385169913777 0.610119459623066]</item>
- </dist_thickness>
- <dist_thickness_kmeans>[2.52671360969543 0.73089445876712 1]</dist_thickness_kmeans>
- <dist_thickness_kmeans_inner3>[1.91171307015768 0.246611333678829 0.290614247842518;2.53833364675843 0.173338833057122 0.42279316374302;3.16098334920279 0.259418406911887 0.286592588414462]</dist_thickness_kmeans_inner3>
- <dist_thickness_kmeans_outer2>[0.882579155751555 0.350798727023088 0.559776157368153;4.08714817879931 0.358542079440069 0.440223842631847]</dist_thickness_kmeans_outer2>
- </subjectmeasures>
- <subjectratings>
- <vol_TIV>1.66803917126284</vol_TIV>
- <vol_rel_CGW>[0.5 6.78491439411139 4.84387475389522 0.5 0.5]</vol_rel_CGW>
- <vol_rel_WMH>1.05033439776363</vol_rel_WMH>
- <surf_TSA>8.62388265061474</surf_TSA>
- <SQR>5.59394503375053</SQR>
- </subjectratings>
- <ppe>
- <affreg>
- <skullstrippedpara>[0 1 0 11156.849 0.404270149157028]</skullstrippedpara>
- <skullstripped>[false]</skullstripped>
- <highBGpara>[0.00205266289412975 0.00187197595369071 0.053550973534584]</highBGpara>
- <highBG>[false]</highBG>
- </affreg>
- <SPMvols0>[966.574184313725 522.270360784314 318.094988235294 713.971870588235 1094.93372156863 8141.22658431372]</SPMvols0>
- <SPMvols1>[841.592262745098 494.566247058824 161.70677254902 510.908760784314 904.616682352941 8228.02216470588]</SPMvols1>
- <tths>
- <gintnorm>
- <T3th>[49.7807998657227 228.082305908203 371.361694335938]</T3th>
- <Tth>
- <T3th>[-39.0836601257324 -39.0836563110352 3.45922422409058 49.7807998657227 228.082305908203 371.361694335938 532.152160644531 917.403015136719]</T3th>
- <T3thx>[0 0.02 0.05 1 2 3 4 5]</T3thx>
- </Tth>
- </gintnorm>
- </tths>
- <reginitp>
- <opt>
- <nits>16</nits>
- <vxreg>1.5</vxreg>
- <rres>3</rres>
- <stepsize>0.5</stepsize>
- <resfac>[1 1 1 1 1]</resfac>
- <ll1th>0.015</ll1th>
- <ll3th>[0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03;0.03 0.03 0.03 0.03 0.03]</ll3th>
- <regstr>15</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr3.0-3.0_or1.5_regstr15.0</testfolder>
- <dtc>[0.0219450257718563 0.0771495029330254 0.0845377668738365 0 0]</dtc>
- <ll>[0.0808141371783088 0 0.0808141371783088 0;0.186417761684752 0.00953575915076724 0.195953520835519 2033.48156738281;0.186417761684752 0.00953575915076724 0.195953520835519 2033.48156738281]</ll>
- <rmsdtc>[0.0465607456862926 0.0979093015193939 0.107215836644173]</rmsdtc>
- <rmsgdt>[0.0330027490854263 0.042629785835743 0.0523813366889954]</rmsgdt>
- <rmsdt>0.107215836644173</rmsdt>
- <dt>0.0845377668738365</dt>
- </reginitp>
- <reg>
- <opt>
- <nits>64</nits>
- <vxreg>1.5</vxreg>
- <rres>1.5</rres>
- <stepsize>0.25</stepsize>
- <resfac>[1.66666666666667 1.5 1.33333333333333 1.16666666666667 1]</resfac>
- <ll1th>0.051</ll1th>
- <ll3th>[0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501;0.0501 0.0501 0.0501 0.0501 0.0501]</ll3th>
- <regstr>0.5</regstr>
- </opt>
- <fast>0</fast>
- <clsn>2</clsn>
- <regra>1</regra>
- <testfolder>Shooting_Template_0_GS_tr1.5_rr2.5-1.5_or1.5_regstr0.5</testfolder>
- <dtc>[0.01021858304739 0.0375361926853657 0.0511854737997055 0.0585283562541008 0.0640958398580551 0.0721796303987503]</dtc>
- <ll>[0.0803934317989593 0 0.0803934317989593 0;0.208806333943834 0.0129046798687424 0.221711013812576 6605.5830078125;0.188482597900271 0.0155457148137033 0.204028312713974 11188.4375;0.169198872130594 0.0174711975503398 0.186670069680934 18838.703125;0.153334529251672 0.0202159808333424 0.173550510085014 35364.88671875;0.153334529251672 0.0202159808333424 0.173550510085014 35364.88671875]</ll>
- <rmsdtc>[0.0118728643283248 0.0428812503814697 0.0626424849033356 0.086520791053772 0.109296947717667 0.11633912473917]</rmsdtc>
- <rmsgdt>[0.00339003186672926 0.01305309869349 0.0282304417341948 0.0483379289507866 0.0665057674050331 0.0718717202544212]</rmsgdt>
- <rmsdt>0.11633912473917</rmsdt>
- <dt>0.0721796303987503</dt>
- </reg>
- </ppe>
- <catlog>
- <item>------------------------------------------------------------------------</item>
- <item>CAT12.8.1 r2040: 1/1: ./sub-0025935/ses-1/sub-0025935_ses-1_run-1_T1w.n</item>
- <item>------------------------------------------------------------------------</item>
- <item>SANLM denoising (medium): 51s</item>
- <item>Internal resampling (1.33x1.00x1.00mm > 1.00x1.00x1.00mm): 1s</item>
- <item>APP: Rough bias correction:</item>
- <item>Initialize 7s</item>
- <item>Estimate background 8s</item>
- <item>Initial correction 8s</item>
- <item>Refine background 4s</item>
- <item>Final correction 6s</item>
- <item>Final scaling 6s</item>
- <item>47s</item>
- <item>Correct center-of-mass 5s</item>
- <item>Affine registration 12s</item>
- <item>SPM preprocessing 1 (estimate 1 - TPM registration): 94s</item>
- <item>SPM preprocessing 1 (estimate 2): 84s</item>
- <item>SPM preprocessing 2 (write):</item>
- <item>Write Segmentation 21s</item>
- <item>Update Segmentation 24s</item>
- <item>Update Skull-Stripping 51s</item>
- <item>Update probability maps 10s</item>
- <item>107s</item>
- <item>Global intensity correction: 19s</item>
- <item>SANLM denoising after intensity normalization (medium): 34s</item>
- <item>Fast Optimized Shooting registration 42s</item>
- <item>Local adaptive segmentation (LASstr=0.50):</item>
- <item>Prepare maps 5s</item>
- <item>Prepare partitions 3s</item>
- <item>Prepare segments (LASmod = 1.00) 18s</item>
- <item>Estimate local tissue thresholds (WM) 25s</item>
- <item>Estimate local tissue thresholds (GM) 36s</item>
- <item>Intensity transformation 0s</item>
- <item>SANLM denoising after LAS (medium) 52s</item>
- <item>143s</item>
- <item>ROI segmentation (partitioning):</item>
- <item>Atlas -> subject space 9s</item>
- <item>Major structures 4s</item>
- <item>Ventricle detection 17s</item>
- <item>Blood vessel detection 13s</item>
- <item>WMH detection (WMHCstr=0.50 > WMHCstr'=0.00) 31s</item>
- <item>Manual stroke lesion detection 0s</item>
- <item>Closing of deep structures 2s</item>
- <item>Side alignment 4s</item>
- <item>Final corrections 5s</item>
- <item>85s</item>
- <item>Blood vessel correction (BVCstr=0.50): 2s</item>
- <item>Amap using initial SPM12 segmentations (MRF filter strength 0.06): 40s</item>
- <item>AMAP peaks: [CSF,GM,WM] = [0.36 0.05,0.68 0.08,0.99 0.04]</item>
- <item>Final cleanup (gcutstr=0.25):</item>
- <item>Level 1 cleanup (ROI estimation) 5s</item>
- <item>Level 1 cleanup (brain masking) 4s</item>
- <item>Level 2 cleanup (CSF correction) 2s</item>
- <item>Level 3 cleanup (CSF/WM PVE) 3s</item>
- <item>14s</item>
- <item>Optimized Shooting registration with 2.50:-0.25:1.50 mm (regstr=0.50):</item>
- <item>Template: "/code/SPM/MCR_Linux/spm12_mcr/home/gaser/gaser/spm/spm12/toolbox/cat12/templates_MNI152NLin2009cAsym/Template_0_GS.nii"</item>
- <item>1 | 2.50 | 0.0804 0.0000 0.0804 | 32.0000</item>
- <item>2 | 2.50 | 0.0778 0.0011 0.0789 | 29.4886</item>
- <item>3 | 2.50 | 0.0770 0.0017 0.0787 | 26.9772</item>
- <item>4 | 2.50 | 0.0766 0.0020 0.0786 | 24.6107</item>
- <item>5 | 2.50 | 0.0763 0.0021 0.0784 | 22.6548</item>
- <item>6 | 2.50 | 0.0760 0.0022 0.0782 | 20.6989</item>
- <item>7 | 2.50 | 0.0758 0.0023 0.0781 | 18.9688</item>
- <item>8 | 2.50 | 0.0755 0.0024 0.0779 | 17.4455</item>
- <item>9 | 2.50 | 0.0752 0.0025 0.0777 | 15.9223</item>
- <item>10 | 2.50 | 0.0749 0.0026 0.0775 | 14.6627</item>
- <item>11 | 2.50 | 0.0746 0.0027 0.0772 | 13.4764</item>
- <item>12 | 2.50 | 0.0743 0.0027 0.0770 | 12.3015</item>
- <item>13 | 2.50 | 0.0739 0.0028 0.0768 | 11.3776</item>
- <item>14 | 2.50 | 0.0736 0.0029 0.0765 | 10.4537</item>
- <item>15 | 2.25 | 0.0723 0.0030 0.0753 | 9.5920</item>
- <item>16 | 2.25 | 0.0696 0.0043 0.0739 | 8.8725</item>
- <item>29 | 2.00 | 0.0706 0.0019 0.0725 | 3.3283</item>
- <item>30 | 2.00 | 0.0648 0.0042 0.0691 | 3.1221</item>
- <item>31 | 2.00 | 0.0628 0.0052 0.0680 | 2.9160</item>
- <item>43 | 1.75 | 0.0617 0.0030 0.0647 | 1.5785</item>
- <item>44 | 1.75 | 0.0577 0.0051 0.0628 | 1.5194</item>
- <item>45 | 1.75 | 0.0564 0.0058 0.0622 | 1.4626</item>
- <item>57 | 1.50 | 0.0550 0.0042 0.0592 | 1.0900</item>
- <item>58 | 1.50 | 0.0521 0.0061 0.0582 | 1.0730</item>
- <item>59 | 1.50 | 0.0511 0.0067 0.0579 | 1.0579</item>
- <item>Shooting registration with 2.50:-0.25:1.50 mm takes: 210s</item>
- <item>Prepare output 15s</item>
- <item>225s</item>
- <item>Jacobian determinant (RMS): 0.012 0.043 0.063 0.087 0.109 | 0.116339</item>
- <item>Template Matching: 0.080 0.209 0.188 0.169 0.153 | 0.153335</item>
- <item>Write result maps: 75s</item>
- <item>Surface and thickness estimation:</item>
- <item>lh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 43s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 63s</item>
- <item>135s</item>
- <item>Create initial surface 110s</item>
- <item>Topology correction: 129s</item>
- <item>Surface refinement: 140s</item>
- <item>Reduction of surface collisions with optimization: 99s</item>
- <item>Spherical mapping with areal smoothing 120s</item>
- <item>Spherical registration 332s</item>
- <item>rh:</item>
- <item>Thickness estimation (0.50 mm ):</item>
- <item>WM distance: 40s</item>
- <item>CSF distance: 21s</item>
- <item>PBT2x thickness: 63s</item>
- <item>131s</item>
- <item>Create initial surface 109s</item>
- <item>Topology correction: 128s</item>
- <item>Surface refinement: 143s</item>
- <item>Reduction of surface collisions with optimization: 93s</item>
- <item>Spherical mapping with areal smoothing 115s</item>
- <item>Spherical registration 351s</item>
- <item>Final surface processing results:</item>
- <item>Average thickness (FS): 2.5145 0.6085 mm</item>
- <item>Surface intensity / position RMSE: 0.0714 / 0.0858</item>
- <item>Euler number / defect number / defect size: 40.0 / 20.5 / 1.44%</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-1/surf/lh.thickness.sub-0025935_ses-1_run-1_T1w</item>
- <item>Display thickness: /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-1/surf/rh.thickness.sub-0025935_ses-1_run-1_T1w</item>
- <item>Show surfaces in orthview: /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-1/sub-0025935_ses-1_run-1_T1w.nii</item>
- <item>Surface ROI estimation: 13s</item>
- <item>Surface and thickness estimation takes: 2264s</item>
- <item>ROI estimation in native space:</item>
- <item>ROI estimation of 'cobra' atlas 11s</item>
- <item>ROI estimation of 'neuromorphometrics' atlas 38s</item>
- <item>ROI estimation of 'lpba40' atlas 11s</item>
- <item>ROI estimation of 'hammers' atlas 28s</item>
- <item>ROI estimation of 'thalamus' atlas 2s</item>
- <item>ROI estimation of 'ibsr' atlas 10s</item>
- <item>ROI estimation of 'aal3' atlas 17s</item>
- <item>ROI estimation of 'mori' atlas 27s</item>
- <item>ROI estimation of 'anatomy3' atlas 42s</item>
- <item>ROI estimation of 'julichbrain' atlas 54s</item>
- <item>ROI estimation of 'Schaefer2018_100Parcels_17Networks_order' atlas 22s</item>
- <item>ROI estimation of 'Schaefer2018_200Parcels_17Networks_order' atlas 41s</item>
- <item>ROI estimation of 'Schaefer2018_400Parcels_17Networks_order' atlas 104s</item>
- <item>ROI estimation of 'Schaefer2018_600Parcels_17Networks_order' atlas 139s</item>
- <item>ROI estimation of 'Tian_Subcortex_S2_7T' atlas 10s</item>
- <item>Write results 12s</item>
- <item>562s</item>
- <item>Quality check: 16s</item>
- <item>Print 'Graphics' figure to:</item>
- <item>/var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-1/report/catreport_sub-0025935_ses-1_run-1_T1w.pdf</item>
- <item>------------------------------------------------------------------------</item>
- <item>CAT preprocessing takes 67 minute(s) and 16 second(s).</item>
- <item>Image Quality Rating (IQR): 81.66% (B-)</item>
- <item>GM volume (GMV): 49.75% (781.73 / 1571.30 ml)</item>
- <item>GM thickness (GMT): 2.51 0.61 mm</item>
- <item>Segmentations are saved in /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-1/mri</item>
- <item>Reports are saved in /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-1/report</item>
- <item>Labels are saved in /var/lib/condor/execute/dir_3318795/ds/BNU_2/sub-0025935/ses-1/label</item>
- <item>------------------------------------------------------------------------</item>
- </catlog>
- </S>
|