[DATALAD RUNCMD] Compute BNU_2/sub-0025922/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025922/ses-1/anat/sub-0025922_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025922/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025922/ses-1/label/catROI_sub-0025922_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mZ/99/MD5E-s57843--e06dcf5ba9d2f45c4f9b6b6d5b8e445c.mat/MD5E-s57843--e06dcf5ba9d2f45c4f9b6b6d5b8e445c.mat

BNU_2/sub-0025922/ses-1/label/catROI_sub-0025922_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JG/X6/MD5E-s188768--63c5e620a58c848ec2b0592920d014d8.xml/MD5E-s188768--63c5e620a58c848ec2b0592920d014d8.xml

BNU_2/sub-0025922/ses-1/label/catROIs_sub-0025922_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/8G/MD5E-s120047--26a7aa303cb3ab4c0f8dd0f7dc719ae6.mat/MD5E-s120047--26a7aa303cb3ab4c0f8dd0f7dc719ae6.mat

BNU_2/sub-0025922/ses-1/label/catROIs_sub-0025922_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J7/zj/MD5E-s332178--1daecd5a64c20755d670d769f81faa52.xml/MD5E-s332178--1daecd5a64c20755d670d769f81faa52.xml

BNU_2/sub-0025922/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025922/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/vw/MD5E-s138347--4bfd6775f49311567f02f156106b5c64.nii.gz/MD5E-s138347--4bfd6775f49311567f02f156106b5c64.nii.gz

BNU_2/sub-0025922/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025922/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/QM/MD5E-s154398--35fa3c350e4a22f7609cbb4e70c7e446.nii.gz/MD5E-s154398--35fa3c350e4a22f7609cbb4e70c7e446.nii.gz

BNU_2/sub-0025922/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025922/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q4/4G/MD5E-s206178--bd54bb89d27a4634c5abc94777597012.nii.gz/MD5E-s206178--bd54bb89d27a4634c5abc94777597012.nii.gz

BNU_2/sub-0025922/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025922/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/zp/MD5E-s228061--a5f5dc934ce3e3f234c1f4820e4e7ac7.nii.gz/MD5E-s228061--a5f5dc934ce3e3f234c1f4820e4e7ac7.nii.gz

BNU_2/sub-0025922/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025922/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zJ/WZ/MD5E-s18701--9838e1c5523a2235ec54c5fa8879647d.nii.gz/MD5E-s18701--9838e1c5523a2235ec54c5fa8879647d.nii.gz

BNU_2/sub-0025922/ses-1/mri/aal3_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025922/ses-1/mri/aal3_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fg/Qp/MD5E-s156318--6df88d9d26f3b215a8e4a920aa61a69e.nii.gz/MD5E-s156318--6df88d9d26f3b215a8e4a920aa61a69e.nii.gz

BNU_2/sub-0025922/ses-1/mri/anatomy3_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025922/ses-1/mri/anatomy3_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/p1/MD5E-s110284--3cd4efc470c9903b0aa54f039e16fe51.nii.gz/MD5E-s110284--3cd4efc470c9903b0aa54f039e16fe51.nii.gz

BNU_2/sub-0025922/ses-1/mri/anon_misub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9f/zG/MD5E-s3599635--217471369c9fd1afb758bc1ade525dd1.nii.gz/MD5E-s3599635--217471369c9fd1afb758bc1ade525dd1.nii.gz

BNU_2/sub-0025922/ses-1/mri/anon_msub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mM/10/MD5E-s7199192--a7eab8393b54b6b7b9bcd04b7b526605.nii.gz/MD5E-s7199192--a7eab8393b54b6b7b9bcd04b7b526605.nii.gz

BNU_2/sub-0025922/ses-1/mri/cat_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zm/fk/MD5E-s80197--4a4cdd69c142f44254cf678400ac9043.nii.gz/MD5E-s80197--4a4cdd69c142f44254cf678400ac9043.nii.gz

BNU_2/sub-0025922/ses-1/mri/cobra_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025922/ses-1/mri/cobra_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/QX/MD5E-s39762--89b3109e9549ac85ef15484e12cae697.nii.gz/MD5E-s39762--89b3109e9549ac85ef15484e12cae697.nii.gz

BNU_2/sub-0025922/ses-1/mri/hammers_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025922/ses-1/mri/hammers_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/q8/MD5E-s122951--6fac06fc39c069a13ca1510e4f3219e8.nii.gz/MD5E-s122951--6fac06fc39c069a13ca1510e4f3219e8.nii.gz

BNU_2/sub-0025922/ses-1/mri/ibsr_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025922/ses-1/mri/ibsr_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Px/8W/MD5E-s127637--80aa61d7c2d7a2b739bf77da1b9a75c3.nii.gz/MD5E-s127637--80aa61d7c2d7a2b739bf77da1b9a75c3.nii.gz

BNU_2/sub-0025922/ses-1/mri/it_sub-0025922_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/jf/MD5E-s283--89429deea42f4cc47621b98f02f1ead8.mat/MD5E-s283--89429deea42f4cc47621b98f02f1ead8.mat

BNU_2/sub-0025922/ses-1/mri/it_sub-0025922_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9P/P1/MD5E-s284--701995e0ec9c668674ad5e24d59ba69a.mat/MD5E-s284--701995e0ec9c668674ad5e24d59ba69a.mat

BNU_2/sub-0025922/ses-1/mri/iy_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x7/7k/MD5E-s32451934--55e6fbf268ea136f10dbe44949edaa9b.nii.gz/MD5E-s32451934--55e6fbf268ea136f10dbe44949edaa9b.nii.gz

BNU_2/sub-0025922/ses-1/mri/julichbrain_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025922/ses-1/mri/julichbrain_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/JV/MD5E-s164115--d6251fd3ef264557a7cbb50bbadb01ef.nii.gz/MD5E-s164115--d6251fd3ef264557a7cbb50bbadb01ef.nii.gz

BNU_2/sub-0025922/ses-1/mri/lpba40_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025922/ses-1/mri/lpba40_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4X/22/MD5E-s119669--8456f420661280bdcdacfacca299795e.nii.gz/MD5E-s119669--8456f420661280bdcdacfacca299795e.nii.gz

BNU_2/sub-0025922/ses-1/mri/m0wp1sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wF/1K/MD5E-s2578588--c7e172d893763c40c95acfbb7187b689.nii.gz/MD5E-s2578588--c7e172d893763c40c95acfbb7187b689.nii.gz

BNU_2/sub-0025922/ses-1/mri/m0wp2sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p6/5v/MD5E-s2273488--529d346b23d6eeab3b8b7ebe95ea3f4b.nii.gz/MD5E-s2273488--529d346b23d6eeab3b8b7ebe95ea3f4b.nii.gz

BNU_2/sub-0025922/ses-1/mri/m0wp3sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/4Z/MD5E-s2424037--0952af71924327a9b34f3e9cb2ffe6dc.nii.gz/MD5E-s2424037--0952af71924327a9b34f3e9cb2ffe6dc.nii.gz

BNU_2/sub-0025922/ses-1/mri/mori_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025922/ses-1/mri/mori_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M1/Fp/MD5E-s144063--6d3c482a3fe75fe282e779a7baf49b95.nii.gz/MD5E-s144063--6d3c482a3fe75fe282e779a7baf49b95.nii.gz

BNU_2/sub-0025922/ses-1/mri/mwp1sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-1/mri/mwp2sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-1/mri/mwp3sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-1/mri/neuromorphometrics_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-1/mri/neuromorphometrics_sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-1/mri/p0sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f3/2v/MD5E-s682952--47741d24fea78406497f36e71fdbd285.nii.gz/MD5E-s682952--47741d24fea78406497f36e71fdbd285.nii.gz

BNU_2/sub-0025922/ses-1/mri/p1sub-0025922_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-1/mri/p2sub-0025922_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025922/ses-1/mri/p3sub-0025922_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025922/ses-1/mri/rp1sub-0025922_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025922/ses-1/mri/rp2sub-0025922_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025922/ses-1/mri/rp3sub-0025922_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025922/ses-1/mri/t_sub-0025922_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-1/mri/t_sub-0025922_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-1/mri/thalamus_sub-0025922_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-1/mri/thalamus_sub-0025922_ses-1_run-1_T1w.nii.gz

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