[DATALAD RUNCMD] Compute BNU_2/sub-0025922/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025922/ses-2/anat/sub-0025922_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025922/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025922/ses-2/label/catROI_sub-0025922_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/64/MD5E-s61232--5ae36bb7cf49608d373d7b83117854f0.mat/MD5E-s61232--5ae36bb7cf49608d373d7b83117854f0.mat

BNU_2/sub-0025922/ses-2/label/catROI_sub-0025922_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/Fz/MD5E-s188927--619c70bdfbcaf60d600344afd5dab456.xml/MD5E-s188927--619c70bdfbcaf60d600344afd5dab456.xml

BNU_2/sub-0025922/ses-2/label/catROIs_sub-0025922_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/35/WP/MD5E-s120006--3bd82340740baf09c3c8667605929edd.mat/MD5E-s120006--3bd82340740baf09c3c8667605929edd.mat

BNU_2/sub-0025922/ses-2/label/catROIs_sub-0025922_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/Jw/MD5E-s332174--ad02f92847e9f25f7e64b9a41ae05de5.xml/MD5E-s332174--ad02f92847e9f25f7e64b9a41ae05de5.xml

BNU_2/sub-0025922/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025922/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wx/jG/MD5E-s156643--21ce512e1bd94e8a340ffc6a14939de4.nii.gz/MD5E-s156643--21ce512e1bd94e8a340ffc6a14939de4.nii.gz

BNU_2/sub-0025922/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025922/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gg/VX/MD5E-s175233--a3f80fdf690fd9dbf152613c095cc0c4.nii.gz/MD5E-s175233--a3f80fdf690fd9dbf152613c095cc0c4.nii.gz

BNU_2/sub-0025922/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025922/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/6z/MD5E-s237635--3cd4469359951efe24c207c01d525f4d.nii.gz/MD5E-s237635--3cd4469359951efe24c207c01d525f4d.nii.gz

BNU_2/sub-0025922/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025922/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/8v/MD5E-s263850--a3e86fed28596872608bb679ede43049.nii.gz/MD5E-s263850--a3e86fed28596872608bb679ede43049.nii.gz

BNU_2/sub-0025922/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025922/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f3/xz/MD5E-s24037--7424c47aefeeeba9a8a87ec9d9f86740.nii.gz/MD5E-s24037--7424c47aefeeeba9a8a87ec9d9f86740.nii.gz

BNU_2/sub-0025922/ses-2/mri/aal3_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025922/ses-2/mri/aal3_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xk/q8/MD5E-s177743--d0cba9a5e4581119d1cf07dc09170f9f.nii.gz/MD5E-s177743--d0cba9a5e4581119d1cf07dc09170f9f.nii.gz

BNU_2/sub-0025922/ses-2/mri/anatomy3_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025922/ses-2/mri/anatomy3_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/58/mX/MD5E-s128665--54ee4d19e560c71a4c3b4106257135d1.nii.gz/MD5E-s128665--54ee4d19e560c71a4c3b4106257135d1.nii.gz

BNU_2/sub-0025922/ses-2/mri/anon_misub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/00/MD5E-s4222291--7738f8d4254b47c0ee4361a952f9c00a.nii.gz/MD5E-s4222291--7738f8d4254b47c0ee4361a952f9c00a.nii.gz

BNU_2/sub-0025922/ses-2/mri/anon_msub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p8/P4/MD5E-s10308891--93aa769f306f601a7a7a6fdd04fdb347.nii.gz/MD5E-s10308891--93aa769f306f601a7a7a6fdd04fdb347.nii.gz

BNU_2/sub-0025922/ses-2/mri/cat_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/gX/MD5E-s93172--66d9bcc756fe3705801bc91bf9d95f6c.nii.gz/MD5E-s93172--66d9bcc756fe3705801bc91bf9d95f6c.nii.gz

BNU_2/sub-0025922/ses-2/mri/cobra_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025922/ses-2/mri/cobra_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/M7/MD5E-s47592--ea1f2f2cff7ae7336e87b52a80bb8fcf.nii.gz/MD5E-s47592--ea1f2f2cff7ae7336e87b52a80bb8fcf.nii.gz

BNU_2/sub-0025922/ses-2/mri/hammers_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025922/ses-2/mri/hammers_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7v/mk/MD5E-s140662--fbf4d704831365782744e98eef7c2ca7.nii.gz/MD5E-s140662--fbf4d704831365782744e98eef7c2ca7.nii.gz

BNU_2/sub-0025922/ses-2/mri/ibsr_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025922/ses-2/mri/ibsr_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kk/7w/MD5E-s147987--9d6e3a8d56e4d0a5c46e19b0519e5809.nii.gz/MD5E-s147987--9d6e3a8d56e4d0a5c46e19b0519e5809.nii.gz

BNU_2/sub-0025922/ses-2/mri/it_sub-0025922_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/f2/MD5E-s284--429b7d033143ab816da32cea3f5d6f60.mat/MD5E-s284--429b7d033143ab816da32cea3f5d6f60.mat

BNU_2/sub-0025922/ses-2/mri/it_sub-0025922_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/Gf/MD5E-s284--0f750cd735488c2ab92f77066b453861.mat/MD5E-s284--0f750cd735488c2ab92f77066b453861.mat

BNU_2/sub-0025922/ses-2/mri/iy_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/F5/MD5E-s43542464--9788b0d1698a72bb44df4ff50c9f8530.nii.gz/MD5E-s43542464--9788b0d1698a72bb44df4ff50c9f8530.nii.gz

BNU_2/sub-0025922/ses-2/mri/julichbrain_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025922/ses-2/mri/julichbrain_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/gv/MD5E-s188704--e113cf0f87634d4e63f6720f28ccd119.nii.gz/MD5E-s188704--e113cf0f87634d4e63f6720f28ccd119.nii.gz

BNU_2/sub-0025922/ses-2/mri/lpba40_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025922/ses-2/mri/lpba40_sub-0025922_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/kK/KK/MD5E-s137274--bcf73a7c37f3dc1269c2cf91fd3a5f9c.nii.gz/MD5E-s137274--bcf73a7c37f3dc1269c2cf91fd3a5f9c.nii.gz

BNU_2/sub-0025922/ses-2/mri/m0wp1sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/jm/MD5E-s2567265--af080d8592f83d643afe7162e01f64ee.nii.gz/MD5E-s2567265--af080d8592f83d643afe7162e01f64ee.nii.gz

BNU_2/sub-0025922/ses-2/mri/m0wp2sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/6W/MD5E-s2282014--2448bfba543f62f443b5f4f605112007.nii.gz/MD5E-s2282014--2448bfba543f62f443b5f4f605112007.nii.gz

BNU_2/sub-0025922/ses-2/mri/m0wp3sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/zQ/MD5E-s2471696--2b0893e80032695edd0fdc588dc7be27.nii.gz/MD5E-s2471696--2b0893e80032695edd0fdc588dc7be27.nii.gz

BNU_2/sub-0025922/ses-2/mri/mori_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025922/ses-2/mri/mori_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/j3/MD5E-s164585--b77b339c6ba4d866dc97428970431f47.nii.gz/MD5E-s164585--b77b339c6ba4d866dc97428970431f47.nii.gz

BNU_2/sub-0025922/ses-2/mri/mwp1sub-0025922_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025922/ses-2/mri/mwp2sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/8f/MD5E-s2283651--34cceb7b0757175107902842d270e7b0.nii.gz/MD5E-s2283651--34cceb7b0757175107902842d270e7b0.nii.gz

BNU_2/sub-0025922/ses-2/mri/mwp3sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-2/mri/neuromorphometrics_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025922/ses-2/mri/neuromorphometrics_sub-0025922_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025922/ses-2/mri/p0sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/0Q/MD5E-s588052--ed97c044b3d14a3ab9d117cc08b251d3.nii.gz/MD5E-s588052--ed97c044b3d14a3ab9d117cc08b251d3.nii.gz

BNU_2/sub-0025922/ses-2/mri/p1sub-0025922_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025922/ses-2/mri/p2sub-0025922_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025922/ses-2/mri/p3sub-0025922_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025922/ses-2/mri/rp1sub-0025922_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025922/ses-2/mri/rp2sub-0025922_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025922/ses-2/mri/rp3sub-0025922_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025922/ses-2/mri/t_sub-0025922_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-2/mri/t_sub-0025922_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-2/mri/thalamus_sub-0025922_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-2/mri/thalamus_sub-0025922_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025922/ses-2/mri/wj_sub-0025922_ses-2_run-1_T1w.nii.gz

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