[DATALAD RUNCMD] Compute BNU_2/sub-0025937/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025937/ses-2/anat/sub-0025937_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025937/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025937/ses-2/label/catROI_sub-0025937_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/Kw/MD5E-s61271--5100b070cea4a827f1b9dfec28a271df.mat/MD5E-s61271--5100b070cea4a827f1b9dfec28a271df.mat

BNU_2/sub-0025937/ses-2/label/catROI_sub-0025937_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/zX/MD5E-s188732--7e97a96c9d4853f2e82d08bd4bab9354.xml/MD5E-s188732--7e97a96c9d4853f2e82d08bd4bab9354.xml

BNU_2/sub-0025937/ses-2/label/catROIs_sub-0025937_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wj/qq/MD5E-s120079--ed3e6155f9105c0d5ac2aa203d7b1234.mat/MD5E-s120079--ed3e6155f9105c0d5ac2aa203d7b1234.mat

BNU_2/sub-0025937/ses-2/label/catROIs_sub-0025937_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/fV/MD5E-s332166--e7466283a3385e9cbd83561a11262601.xml/MD5E-s332166--e7466283a3385e9cbd83561a11262601.xml

BNU_2/sub-0025937/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025937/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jZ/47/MD5E-s173521--2641adbcf2e2012d39703c6498a461e1.nii.gz/MD5E-s173521--2641adbcf2e2012d39703c6498a461e1.nii.gz

BNU_2/sub-0025937/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025937/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/8G/MD5E-s193395--eca7a0689b1eff8cc0aa6eab85e3e1e9.nii.gz/MD5E-s193395--eca7a0689b1eff8cc0aa6eab85e3e1e9.nii.gz

BNU_2/sub-0025937/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025937/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/vP/MD5E-s261235--2b4926b0690e1689493550664884b98d.nii.gz/MD5E-s261235--2b4926b0690e1689493550664884b98d.nii.gz

BNU_2/sub-0025937/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025937/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/m7/MD5E-s289132--bfcb99c341a18efbe547a156e3a04647.nii.gz/MD5E-s289132--bfcb99c341a18efbe547a156e3a04647.nii.gz

BNU_2/sub-0025937/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025937/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gX/4P/MD5E-s25333--dd2c344d58faff6653dc9b4320836b1a.nii.gz/MD5E-s25333--dd2c344d58faff6653dc9b4320836b1a.nii.gz

BNU_2/sub-0025937/ses-2/mri/aal3_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025937/ses-2/mri/aal3_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/MZ/MD5E-s196477--bee6e6bce5dab28cb8671cf0a8dcde88.nii.gz/MD5E-s196477--bee6e6bce5dab28cb8671cf0a8dcde88.nii.gz

BNU_2/sub-0025937/ses-2/mri/anatomy3_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025937/ses-2/mri/anatomy3_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J1/9g/MD5E-s142703--fdda36f2366d6d137ced42375d4c0b38.nii.gz/MD5E-s142703--fdda36f2366d6d137ced42375d4c0b38.nii.gz

BNU_2/sub-0025937/ses-2/mri/anon_misub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G0/wx/MD5E-s5134941--598ad8a4a66a0c75d5027b72f9256543.nii.gz/MD5E-s5134941--598ad8a4a66a0c75d5027b72f9256543.nii.gz

BNU_2/sub-0025937/ses-2/mri/anon_msub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6g/6P/MD5E-s11090012--1501d801a56baa1743ee676057a7b0d7.nii.gz/MD5E-s11090012--1501d801a56baa1743ee676057a7b0d7.nii.gz

BNU_2/sub-0025937/ses-2/mri/cat_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gQ/ZW/MD5E-s107914--d2a69e9a7dd0f2a3c0c4e86d2d175c2e.nii.gz/MD5E-s107914--d2a69e9a7dd0f2a3c0c4e86d2d175c2e.nii.gz

BNU_2/sub-0025937/ses-2/mri/cobra_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025937/ses-2/mri/cobra_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/qF/MD5E-s50932--e77d83cbf0782e9757ce9ae6bc9ce060.nii.gz/MD5E-s50932--e77d83cbf0782e9757ce9ae6bc9ce060.nii.gz

BNU_2/sub-0025937/ses-2/mri/hammers_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025937/ses-2/mri/hammers_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/fq/MD5E-s155880--96892978b6be6680e1f4e14841fd3c6a.nii.gz/MD5E-s155880--96892978b6be6680e1f4e14841fd3c6a.nii.gz

BNU_2/sub-0025937/ses-2/mri/ibsr_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025937/ses-2/mri/ibsr_sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zw/m4/MD5E-s163048--91cfdc4918cc779f165c8e74a9c4eab7.nii.gz/MD5E-s163048--91cfdc4918cc779f165c8e74a9c4eab7.nii.gz

BNU_2/sub-0025937/ses-2/mri/it_sub-0025937_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/1X/MD5E-s282--6ffb3a8612f38f3b08ce9a9cebae3ea4.mat/MD5E-s282--6ffb3a8612f38f3b08ce9a9cebae3ea4.mat

BNU_2/sub-0025937/ses-2/mri/it_sub-0025937_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JG/gz/MD5E-s282--2d61b2a5e5656201d93be4964828df0d.mat/MD5E-s282--2d61b2a5e5656201d93be4964828df0d.mat

BNU_2/sub-0025937/ses-2/mri/iy_sub-0025937_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Fx/51/MD5E-s49821072--810a2cef89b05d1be82548c6071df1a5.nii.gz/MD5E-s49821072--810a2cef89b05d1be82548c6071df1a5.nii.gz

BNU_2/sub-0025937/ses-2/mri/julichbrain_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025937/ses-2/mri/julichbrain_sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/lpba40_sub-0025937_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025937/ses-2/mri/lpba40_sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/m0wp1sub-0025937_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4W/w6/MD5E-s2573018--eba3fda9e28b1369e89046886da24fdd.nii.gz/MD5E-s2573018--eba3fda9e28b1369e89046886da24fdd.nii.gz

BNU_2/sub-0025937/ses-2/mri/m0wp2sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/m0wp3sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/mori_sub-0025937_ses-2_run-1_T1w.csv

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BNU_2/sub-0025937/ses-2/mri/mori_sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/mwp1sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/mwp2sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/mwp3sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/neuromorphometrics_sub-0025937_ses-2_run-1_T1w.csv

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BNU_2/sub-0025937/ses-2/mri/neuromorphometrics_sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/p0sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/p1sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/p2sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/p3sub-0025937_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-2/mri/rp1sub-0025937_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025937/ses-2/mri/rp2sub-0025937_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025937/ses-2/mri/rp3sub-0025937_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025937/ses-2/mri/t_sub-0025937_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025937/ses-2/mri/t_sub-0025937_ses-2_run-1_T1w_rigid_reorient.mat

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BNU_2/sub-0025937/ses-2/mri/thalamus_sub-0025937_ses-2_run-1_T1w.csv

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