[DATALAD RUNCMD] Compute BNU_2/sub-0025937/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025937/ses-1/anat/sub-0025937_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025937/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025937/ses-1/label/catROI_sub-0025937_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2x/gQ/MD5E-s58057--0d80042259e80dff3ec3fbb550717d3c.mat/MD5E-s58057--0d80042259e80dff3ec3fbb550717d3c.mat

BNU_2/sub-0025937/ses-1/label/catROI_sub-0025937_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/XP/MD5E-s188728--d5b181c67a4c76c507168c4288e1ab76.xml/MD5E-s188728--d5b181c67a4c76c507168c4288e1ab76.xml

BNU_2/sub-0025937/ses-1/label/catROIs_sub-0025937_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/zz/MD5E-s120104--18667519fd251c20dccb888302456330.mat/MD5E-s120104--18667519fd251c20dccb888302456330.mat

BNU_2/sub-0025937/ses-1/label/catROIs_sub-0025937_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/3m/MD5E-s332101--e06f6b5e2c2b93c9c4662a77a265a95b.xml/MD5E-s332101--e06f6b5e2c2b93c9c4662a77a265a95b.xml

BNU_2/sub-0025937/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025937/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/91/MD5E-s151837--17e6de5954ee5fd206b9379fd5192437.nii.gz/MD5E-s151837--17e6de5954ee5fd206b9379fd5192437.nii.gz

BNU_2/sub-0025937/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025937/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0W/Jp/MD5E-s169209--cc16807f22c5c297e2da9f7dfb1e5af3.nii.gz/MD5E-s169209--cc16807f22c5c297e2da9f7dfb1e5af3.nii.gz

BNU_2/sub-0025937/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025937/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/qj/MD5E-s224963--74f964990ba25a8230648f0b34a23f26.nii.gz/MD5E-s224963--74f964990ba25a8230648f0b34a23f26.nii.gz

BNU_2/sub-0025937/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025937/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zw/x0/MD5E-s249716--ebcb8cf5edb289b213baf0d869f39919.nii.gz/MD5E-s249716--ebcb8cf5edb289b213baf0d869f39919.nii.gz

BNU_2/sub-0025937/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025937/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/52/MD5E-s19704--8db7cbb12e51ccad9e23ffe910348f43.nii.gz/MD5E-s19704--8db7cbb12e51ccad9e23ffe910348f43.nii.gz

BNU_2/sub-0025937/ses-1/mri/aal3_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025937/ses-1/mri/aal3_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/94/MD5E-s171620--3e17bcde0e9161b61c85e21de3c70dd9.nii.gz/MD5E-s171620--3e17bcde0e9161b61c85e21de3c70dd9.nii.gz

BNU_2/sub-0025937/ses-1/mri/anatomy3_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025937/ses-1/mri/anatomy3_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/0j/MD5E-s122355--40db6c252123cf58fdeaa777ceb73a07.nii.gz/MD5E-s122355--40db6c252123cf58fdeaa777ceb73a07.nii.gz

BNU_2/sub-0025937/ses-1/mri/anon_misub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1v/p0/MD5E-s4272480--d2e01e1a0903af8c870992575a1b53fa.nii.gz/MD5E-s4272480--d2e01e1a0903af8c870992575a1b53fa.nii.gz

BNU_2/sub-0025937/ses-1/mri/anon_msub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/mV/MD5E-s9433450--9ea11998492474bb5418d6c74435e086.nii.gz/MD5E-s9433450--9ea11998492474bb5418d6c74435e086.nii.gz

BNU_2/sub-0025937/ses-1/mri/cat_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/pg/MD5E-s93406--2c50cbbe5b082372cf0fd23fd36d32ec.nii.gz/MD5E-s93406--2c50cbbe5b082372cf0fd23fd36d32ec.nii.gz

BNU_2/sub-0025937/ses-1/mri/cobra_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025937/ses-1/mri/cobra_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/8W/MD5E-s43034--3b3ca1a7877de8bc6e43c9c61ccc634f.nii.gz/MD5E-s43034--3b3ca1a7877de8bc6e43c9c61ccc634f.nii.gz

BNU_2/sub-0025937/ses-1/mri/hammers_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025937/ses-1/mri/hammers_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/XP/MD5E-s135587--937ea80765c0a977c1f82732ea9e078a.nii.gz/MD5E-s135587--937ea80765c0a977c1f82732ea9e078a.nii.gz

BNU_2/sub-0025937/ses-1/mri/ibsr_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025937/ses-1/mri/ibsr_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/V7/MD5E-s142489--1d71b0b0977cf454c7654f7ca0f37166.nii.gz/MD5E-s142489--1d71b0b0977cf454c7654f7ca0f37166.nii.gz

BNU_2/sub-0025937/ses-1/mri/it_sub-0025937_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/K9/MD5E-s283--4a099656d9b557667d3a0358adf8e81b.mat/MD5E-s283--4a099656d9b557667d3a0358adf8e81b.mat

BNU_2/sub-0025937/ses-1/mri/it_sub-0025937_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/G1/MD5E-s283--2411c6b80594334017786aeb67760c23.mat/MD5E-s283--2411c6b80594334017786aeb67760c23.mat

BNU_2/sub-0025937/ses-1/mri/iy_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pW/J1/MD5E-s37128205--1e996ed9e53985dec9e66e5d8c6e4099.nii.gz/MD5E-s37128205--1e996ed9e53985dec9e66e5d8c6e4099.nii.gz

BNU_2/sub-0025937/ses-1/mri/julichbrain_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025937/ses-1/mri/julichbrain_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M4/vK/MD5E-s182053--435647b784deccf3ed8480c269f4105d.nii.gz/MD5E-s182053--435647b784deccf3ed8480c269f4105d.nii.gz

BNU_2/sub-0025937/ses-1/mri/lpba40_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025937/ses-1/mri/lpba40_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Q/zw/MD5E-s133278--448b781ec649bc3f8bf4f13f992dae64.nii.gz/MD5E-s133278--448b781ec649bc3f8bf4f13f992dae64.nii.gz

BNU_2/sub-0025937/ses-1/mri/m0wp1sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/v1/MD5E-s2582447--5478a732d8570361dc2d5b3f7c53583b.nii.gz/MD5E-s2582447--5478a732d8570361dc2d5b3f7c53583b.nii.gz

BNU_2/sub-0025937/ses-1/mri/m0wp2sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/q4/MD5E-s2273058--93129008d72751eaedfc6c73656409d8.nii.gz/MD5E-s2273058--93129008d72751eaedfc6c73656409d8.nii.gz

BNU_2/sub-0025937/ses-1/mri/m0wp3sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MK/G2/MD5E-s2464675--ced943689dbf51a900be7cef74d54d49.nii.gz/MD5E-s2464675--ced943689dbf51a900be7cef74d54d49.nii.gz

BNU_2/sub-0025937/ses-1/mri/mori_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025937/ses-1/mri/mori_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/m4/MD5E-s158993--a439bb1a64c4a0a342cee7bf4bd692c7.nii.gz/MD5E-s158993--a439bb1a64c4a0a342cee7bf4bd692c7.nii.gz

BNU_2/sub-0025937/ses-1/mri/mwp1sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zp/fW/MD5E-s2582109--7eace8816e9ff01ca9443a61ea8b41cb.nii.gz/MD5E-s2582109--7eace8816e9ff01ca9443a61ea8b41cb.nii.gz

BNU_2/sub-0025937/ses-1/mri/mwp2sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/Kg/MD5E-s2267808--26f15a99ff678f84dc33c4c73fcb548d.nii.gz/MD5E-s2267808--26f15a99ff678f84dc33c4c73fcb548d.nii.gz

BNU_2/sub-0025937/ses-1/mri/mwp3sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025937/ses-1/mri/neuromorphometrics_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025937/ses-1/mri/neuromorphometrics_sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fm/Zj/MD5E-s184055--f5948dc1f734414b8ffbab1e404740f3.nii.gz/MD5E-s184055--f5948dc1f734414b8ffbab1e404740f3.nii.gz

BNU_2/sub-0025937/ses-1/mri/p0sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xg/0m/MD5E-s792896--3a0a6c18ba7f6327879ec7ec61f6150b.nii.gz/MD5E-s792896--3a0a6c18ba7f6327879ec7ec61f6150b.nii.gz

BNU_2/sub-0025937/ses-1/mri/p1sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5W/9M/MD5E-s809601--2697ad3be4a3a0fcacceeaf9f18bd1f2.nii.gz/MD5E-s809601--2697ad3be4a3a0fcacceeaf9f18bd1f2.nii.gz

BNU_2/sub-0025937/ses-1/mri/p2sub-0025937_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fp/Fz/MD5E-s539491--50f6f3501375f5ec2055b223fa10548a.nii.gz/MD5E-s539491--50f6f3501375f5ec2055b223fa10548a.nii.gz

BNU_2/sub-0025937/ses-1/mri/p3sub-0025937_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025937/ses-1/mri/rp1sub-0025937_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025937/ses-1/mri/rp2sub-0025937_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025937/ses-1/mri/rp3sub-0025937_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025937/ses-1/mri/t_sub-0025937_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/qk/MD5E-s283--4a23c733c0bda82087fd9a3c98f4cffc.mat/MD5E-s283--4a23c733c0bda82087fd9a3c98f4cffc.mat

BNU_2/sub-0025937/ses-1/mri/t_sub-0025937_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025937/ses-1/mri/thalamus_sub-0025937_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025937/ses-1/mri/thalamus_sub-0025937_ses-1_run-1_T1w.nii.gz

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