[DATALAD RUNCMD] Compute BNU_2/sub-0025923/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025923/ses-1/anat/sub-0025923_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025923/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025923/ses-1/label/catROI_sub-0025923_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1K/MF/MD5E-s57880--ff6befe0c55043f0aec3e1ab87dcc16a.mat/MD5E-s57880--ff6befe0c55043f0aec3e1ab87dcc16a.mat

BNU_2/sub-0025923/ses-1/label/catROI_sub-0025923_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W1/74/MD5E-s188745--84bab22a4cd0c3518a6cb46eaf5f2dad.xml/MD5E-s188745--84bab22a4cd0c3518a6cb46eaf5f2dad.xml

BNU_2/sub-0025923/ses-1/label/catROIs_sub-0025923_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/4v/MD5E-s120031--6c36990655fee27385295ef5082b47ca.mat/MD5E-s120031--6c36990655fee27385295ef5082b47ca.mat

BNU_2/sub-0025923/ses-1/label/catROIs_sub-0025923_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8X/wQ/MD5E-s332048--5502bf9b91b755201b19b05d84944eff.xml/MD5E-s332048--5502bf9b91b755201b19b05d84944eff.xml

BNU_2/sub-0025923/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025923/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9G/5p/MD5E-s141999--5b1096b1defbaecd44f0cc68d1046a55.nii.gz/MD5E-s141999--5b1096b1defbaecd44f0cc68d1046a55.nii.gz

BNU_2/sub-0025923/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025923/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/4Z/MD5E-s158450--ee85702a6628ca3574b3fa7567fb1301.nii.gz/MD5E-s158450--ee85702a6628ca3574b3fa7567fb1301.nii.gz

BNU_2/sub-0025923/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025923/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5K/jk/MD5E-s211842--5137effee751d44742e46d596d8e6f6a.nii.gz/MD5E-s211842--5137effee751d44742e46d596d8e6f6a.nii.gz

BNU_2/sub-0025923/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025923/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mg/Wj/MD5E-s233787--9fcb112340e1d8873bfcc388df619ba1.nii.gz/MD5E-s233787--9fcb112340e1d8873bfcc388df619ba1.nii.gz

BNU_2/sub-0025923/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025923/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xk/77/MD5E-s19565--619d7425be4e596f469d221b9b25b02c.nii.gz/MD5E-s19565--619d7425be4e596f469d221b9b25b02c.nii.gz

BNU_2/sub-0025923/ses-1/mri/aal3_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025923/ses-1/mri/aal3_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/94/pz/MD5E-s160711--418d7e81d3ac9757501ef8cb70b34271.nii.gz/MD5E-s160711--418d7e81d3ac9757501ef8cb70b34271.nii.gz

BNU_2/sub-0025923/ses-1/mri/anatomy3_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025923/ses-1/mri/anatomy3_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1x/wV/MD5E-s111595--4bfa0d9381676c4abd8220438849c454.nii.gz/MD5E-s111595--4bfa0d9381676c4abd8220438849c454.nii.gz

BNU_2/sub-0025923/ses-1/mri/anon_misub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/41/JK/MD5E-s3606794--a49f504a61ec9131eca20ee7405f17a8.nii.gz/MD5E-s3606794--a49f504a61ec9131eca20ee7405f17a8.nii.gz

BNU_2/sub-0025923/ses-1/mri/anon_msub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/Qz/MD5E-s9383832--2d4bf9373cd6c087d15a39ee8fcf0288.nii.gz/MD5E-s9383832--2d4bf9373cd6c087d15a39ee8fcf0288.nii.gz

BNU_2/sub-0025923/ses-1/mri/cat_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/Q9/MD5E-s85651--d073f469328ba901e619b3df0bed33e2.nii.gz/MD5E-s85651--d073f469328ba901e619b3df0bed33e2.nii.gz

BNU_2/sub-0025923/ses-1/mri/cobra_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025923/ses-1/mri/cobra_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6q/QX/MD5E-s39473--dc5390c3830c5494fd5bb17004769018.nii.gz/MD5E-s39473--dc5390c3830c5494fd5bb17004769018.nii.gz

BNU_2/sub-0025923/ses-1/mri/hammers_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025923/ses-1/mri/hammers_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/20/MD5E-s125930--898727898b9402232736f46aced743ea.nii.gz/MD5E-s125930--898727898b9402232736f46aced743ea.nii.gz

BNU_2/sub-0025923/ses-1/mri/ibsr_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025923/ses-1/mri/ibsr_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/41/MD5E-s131768--97058a11dd6a08e1b441a468c26aaa95.nii.gz/MD5E-s131768--97058a11dd6a08e1b441a468c26aaa95.nii.gz

BNU_2/sub-0025923/ses-1/mri/it_sub-0025923_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/9W/MD5E-s282--a2b6af0808f82741fa1e9cdb4b65a865.mat/MD5E-s282--a2b6af0808f82741fa1e9cdb4b65a865.mat

BNU_2/sub-0025923/ses-1/mri/it_sub-0025923_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gG/14/MD5E-s283--d3bfd06fea1bc1e6d5e58f8a7378a52b.mat/MD5E-s283--d3bfd06fea1bc1e6d5e58f8a7378a52b.mat

BNU_2/sub-0025923/ses-1/mri/iy_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/VM/MD5E-s33348890--36aed0a0d177e885ffb30ddb38f2cc2e.nii.gz/MD5E-s33348890--36aed0a0d177e885ffb30ddb38f2cc2e.nii.gz

BNU_2/sub-0025923/ses-1/mri/julichbrain_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025923/ses-1/mri/julichbrain_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J1/ZX/MD5E-s168179--483117eab6948c542ed432efc894ffc0.nii.gz/MD5E-s168179--483117eab6948c542ed432efc894ffc0.nii.gz

BNU_2/sub-0025923/ses-1/mri/lpba40_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025923/ses-1/mri/lpba40_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vf/9M/MD5E-s123627--09a77e4e11dc2dc2a1c6fcbe204eb5c9.nii.gz/MD5E-s123627--09a77e4e11dc2dc2a1c6fcbe204eb5c9.nii.gz

BNU_2/sub-0025923/ses-1/mri/m0wp1sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K2/k4/MD5E-s2588578--502a34a0acb648be5703c81ffd4119f2.nii.gz/MD5E-s2588578--502a34a0acb648be5703c81ffd4119f2.nii.gz

BNU_2/sub-0025923/ses-1/mri/m0wp2sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/P2/MD5E-s2281443--03f67205fe3776219e86a3c728c73ccd.nii.gz/MD5E-s2281443--03f67205fe3776219e86a3c728c73ccd.nii.gz

BNU_2/sub-0025923/ses-1/mri/m0wp3sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p5/qG/MD5E-s2423400--def3b7d847a0a3f5efe0125988625ba8.nii.gz/MD5E-s2423400--def3b7d847a0a3f5efe0125988625ba8.nii.gz

BNU_2/sub-0025923/ses-1/mri/mori_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025923/ses-1/mri/mori_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/Q6/MD5E-s148905--788f094d638f6633ac1edabb27df73da.nii.gz/MD5E-s148905--788f094d638f6633ac1edabb27df73da.nii.gz

BNU_2/sub-0025923/ses-1/mri/mwp1sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/wf/MD5E-s2594742--daa702dd47cce4b20d0f1b1f135d4d8b.nii.gz/MD5E-s2594742--daa702dd47cce4b20d0f1b1f135d4d8b.nii.gz

BNU_2/sub-0025923/ses-1/mri/mwp2sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/VK/MD5E-s2276173--cd63a1dc684f0562fb14889d5766e103.nii.gz/MD5E-s2276173--cd63a1dc684f0562fb14889d5766e103.nii.gz

BNU_2/sub-0025923/ses-1/mri/mwp3sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025923/ses-1/mri/neuromorphometrics_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025923/ses-1/mri/neuromorphometrics_sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2m/GZ/MD5E-s170399--cc54b2f571d96e3807c6641cd5a60e50.nii.gz/MD5E-s170399--cc54b2f571d96e3807c6641cd5a60e50.nii.gz

BNU_2/sub-0025923/ses-1/mri/p0sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/3Z/MD5E-s691141--e343801af81f872bae985ef6f5616ae6.nii.gz/MD5E-s691141--e343801af81f872bae985ef6f5616ae6.nii.gz

BNU_2/sub-0025923/ses-1/mri/p1sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/m5/MD5E-s712623--b5b4318e5b041b08d0b155115d3a19ce.nii.gz/MD5E-s712623--b5b4318e5b041b08d0b155115d3a19ce.nii.gz

BNU_2/sub-0025923/ses-1/mri/p2sub-0025923_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/07/J4/MD5E-s488150--93ddd95a8f312296a45912e42f769657.nii.gz/MD5E-s488150--93ddd95a8f312296a45912e42f769657.nii.gz

BNU_2/sub-0025923/ses-1/mri/p3sub-0025923_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-1/mri/rp1sub-0025923_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025923/ses-1/mri/rp2sub-0025923_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025923/ses-1/mri/rp3sub-0025923_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025923/ses-1/mri/t_sub-0025923_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/1K/MD5E-s284--68c0cbe5bca164e97b9d051d75202f6b.mat/MD5E-s284--68c0cbe5bca164e97b9d051d75202f6b.mat

BNU_2/sub-0025923/ses-1/mri/t_sub-0025923_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q1/pv/MD5E-s284--fce875f82217c53d7f1c44e724ac3ec4.mat/MD5E-s284--fce875f82217c53d7f1c44e724ac3ec4.mat

BNU_2/sub-0025923/ses-1/mri/thalamus_sub-0025923_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025923/ses-1/mri/thalamus_sub-0025923_ses-1_run-1_T1w.nii.gz

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