[DATALAD RUNCMD] Compute BNU_2/sub-0025923/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025923/ses-2/anat/sub-0025923_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025923/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025923/ses-2/label/catROI_sub-0025923_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xm/mk/MD5E-s61247--952f663f73c2821380275a8bb339563e.mat/MD5E-s61247--952f663f73c2821380275a8bb339563e.mat

BNU_2/sub-0025923/ses-2/label/catROI_sub-0025923_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F0/M9/MD5E-s188938--394b7aba945cf7689bea33f01eea1e3d.xml/MD5E-s188938--394b7aba945cf7689bea33f01eea1e3d.xml

BNU_2/sub-0025923/ses-2/label/catROIs_sub-0025923_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vw/zj/MD5E-s119994--ce2f2176155cb22c941f2f13e77f7d18.mat/MD5E-s119994--ce2f2176155cb22c941f2f13e77f7d18.mat

BNU_2/sub-0025923/ses-2/label/catROIs_sub-0025923_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/FV/MD5E-s332034--12b00a896e76b3f9f3d80e6247ab631f.xml/MD5E-s332034--12b00a896e76b3f9f3d80e6247ab631f.xml

BNU_2/sub-0025923/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025923/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g0/x3/MD5E-s160710--fa0d4f7760ea7e1511b5925f1f7f9cb2.nii.gz/MD5E-s160710--fa0d4f7760ea7e1511b5925f1f7f9cb2.nii.gz

BNU_2/sub-0025923/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025923/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/pq/MD5E-s178113--07258fd816d7bd491501fcce601a2847.nii.gz/MD5E-s178113--07258fd816d7bd491501fcce601a2847.nii.gz

BNU_2/sub-0025923/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025923/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/04/ZF/MD5E-s243031--f7b6bc26411115105cf231bb4a6b16bb.nii.gz/MD5E-s243031--f7b6bc26411115105cf231bb4a6b16bb.nii.gz

BNU_2/sub-0025923/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025923/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zp/VM/MD5E-s268444--7bac54253110d35dac9494a2346f1f99.nii.gz/MD5E-s268444--7bac54253110d35dac9494a2346f1f99.nii.gz

BNU_2/sub-0025923/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025923/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/6K/MD5E-s24833--e59a61f3f0365200cb8a2669360a3d4a.nii.gz/MD5E-s24833--e59a61f3f0365200cb8a2669360a3d4a.nii.gz

BNU_2/sub-0025923/ses-2/mri/aal3_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025923/ses-2/mri/aal3_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/pg/MD5E-s180788--c5244284b3f73c58f5f1283388c76c68.nii.gz/MD5E-s180788--c5244284b3f73c58f5f1283388c76c68.nii.gz

BNU_2/sub-0025923/ses-2/mri/anatomy3_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025923/ses-2/mri/anatomy3_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/10/MD5E-s129889--a5b859a5bce6fea244a1136ec5c9cc01.nii.gz/MD5E-s129889--a5b859a5bce6fea244a1136ec5c9cc01.nii.gz

BNU_2/sub-0025923/ses-2/mri/anon_misub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zm/53/MD5E-s4129023--ae81a7370637fb4a63a494eb8c684026.nii.gz/MD5E-s4129023--ae81a7370637fb4a63a494eb8c684026.nii.gz

BNU_2/sub-0025923/ses-2/mri/anon_msub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/5g/MD5E-s10257296--70ad03a545901e353721407aae2547a3.nii.gz/MD5E-s10257296--70ad03a545901e353721407aae2547a3.nii.gz

BNU_2/sub-0025923/ses-2/mri/cat_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qm/X0/MD5E-s97999--0b076f0439122005b31bbaf7d1987386.nii.gz/MD5E-s97999--0b076f0439122005b31bbaf7d1987386.nii.gz

BNU_2/sub-0025923/ses-2/mri/cobra_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025923/ses-2/mri/cobra_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/xW/MD5E-s46923--21633d5034da78c1a63296ba5daae46b.nii.gz/MD5E-s46923--21633d5034da78c1a63296ba5daae46b.nii.gz

BNU_2/sub-0025923/ses-2/mri/hammers_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025923/ses-2/mri/hammers_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jk/Q0/MD5E-s142982--9aaed8591eec143a0f59a97a562904eb.nii.gz/MD5E-s142982--9aaed8591eec143a0f59a97a562904eb.nii.gz

BNU_2/sub-0025923/ses-2/mri/ibsr_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025923/ses-2/mri/ibsr_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/X0/MD5E-s150946--a96d19f72955e704d0dbf4c3c4966aa5.nii.gz/MD5E-s150946--a96d19f72955e704d0dbf4c3c4966aa5.nii.gz

BNU_2/sub-0025923/ses-2/mri/it_sub-0025923_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/35/Qk/MD5E-s282--bca3b0b543712eec07ab311904d39ca3.mat/MD5E-s282--bca3b0b543712eec07ab311904d39ca3.mat

BNU_2/sub-0025923/ses-2/mri/it_sub-0025923_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/42/2p/MD5E-s282--0626f5e46149be791c214bd305b57adc.mat/MD5E-s282--0626f5e46149be791c214bd305b57adc.mat

BNU_2/sub-0025923/ses-2/mri/iy_sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vv/wp/MD5E-s44763605--516653926b67a658c304ec0c1b958d06.nii.gz/MD5E-s44763605--516653926b67a658c304ec0c1b958d06.nii.gz

BNU_2/sub-0025923/ses-2/mri/julichbrain_sub-0025923_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025923/ses-2/mri/julichbrain_sub-0025923_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-2/mri/lpba40_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025923/ses-2/mri/lpba40_sub-0025923_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-2/mri/m0wp1sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/34/7x/MD5E-s2571952--ce545748abd51f5218f68c447d5e2ac4.nii.gz/MD5E-s2571952--ce545748abd51f5218f68c447d5e2ac4.nii.gz

BNU_2/sub-0025923/ses-2/mri/m0wp2sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025923/ses-2/mri/m0wp3sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/pk/MD5E-s2508845--2c74dccd32048c3e44a6fa604140f14a.nii.gz/MD5E-s2508845--2c74dccd32048c3e44a6fa604140f14a.nii.gz

BNU_2/sub-0025923/ses-2/mri/mori_sub-0025923_ses-2_run-1_T1w.csv

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BNU_2/sub-0025923/ses-2/mri/mori_sub-0025923_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-2/mri/mwp1sub-0025923_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-2/mri/mwp2sub-0025923_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025923/ses-2/mri/mwp3sub-0025923_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-2/mri/neuromorphometrics_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025923/ses-2/mri/neuromorphometrics_sub-0025923_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-2/mri/p0sub-0025923_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-2/mri/p1sub-0025923_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-2/mri/p2sub-0025923_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-2/mri/p3sub-0025923_ses-2_run-1_T1w.nii.gz

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BNU_2/sub-0025923/ses-2/mri/rp1sub-0025923_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025923/ses-2/mri/rp2sub-0025923_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025923/ses-2/mri/rp3sub-0025923_ses-2_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025923/ses-2/mri/t_sub-0025923_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025923/ses-2/mri/t_sub-0025923_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025923/ses-2/mri/thalamus_sub-0025923_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025923/ses-2/mri/thalamus_sub-0025923_ses-2_run-1_T1w.nii.gz

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