This repository contains the data and models underlying the analyses published in Oesterle, Ran et al. (2024)
Jonathan Oesterle
9bf15f486c
gin commit from DESKTOP-PE0A79K
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3 周之前 | |
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| code | 3 周之前 | |
| data | 3 周之前 | |
| .gitignore | 1 月之前 | |
| LICENSE | 3 周之前 | |
| README.md | 3 周之前 | |
| datacite.yml | 3 周之前 |
This repository contains the data and models underlying the analyses published in Oesterle, Ran et al. (2024): "Task-specific regional circuit adaptations in distinct mouse retinal ganglion cells". This work provides evidence support that the mouse retina shows regional adaptations in signal processing, enhancing their ability to detect prey during hunting.“
The repository contains two sub-directories holding the data and code, respectively, which are structured as outlined below.
The relevant data can be found in the data folder.
data/Ran contains the dendritic data, for both calcium and glutamate imaging.data/Oesterle contains somatic calcium recordings.data/Stimulus contains the necessary stimuli (e.g. the dense noise stimulus to compute receptive fields).The code can be found in the code folder; it's published under the MIT license.
First, install all packages and their requirements (in case of the model only if you want to use it).
code/AlphaDjimaging.code/AlphaAnalysis.code/AlphaCNN.code/AlphaFigures.See acknowledgments section in Oesterle, Ran et al. (2024).
| datacite.yml | |
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| Title | Task-specific regional circuit adaptations in distinct mouse retinal ganglion cells |
| Authors |
Oesterle,Jonathan;Institute for Ophthalmic Research, University of Tübingen, Germany; Hertie Institute for AI in Brain Health, University of Tübingen, Tübingen, Germany;ORCID:0000-0001-8919-1445
Ran,Yanli;Institute for Ophthalmic Research, University of Tübingen, Germany; Institute of Physiology, School of Basic Medical Sciences, Lanzhou University, China Stahr,Paul;Max Planck Institute for Neurobiology of Behavior, Bonn, Germany Kerr,Jason ND;Max Planck Institute for Neurobiology of Behavior, Bonn, Germany;ORCID:0000-0001-9459-883X Schubert,Timm;Institute for Ophthalmic Research, University of Tübingen, Germany Berens,Philipp;Hertie Institute for AI in Brain Health, University of Tübingen, Tübingen, Germany;ORCID:0000-0002-0199-4727 Euler,Thomas;Institute for Ophthalmic Research, University of Tübingen, Germany;ORCID:0000-0002-4567-6966 |
| Description | This repository contains the data, analysis pipeline, and models underlying the analyses published in Oesterle, Ran et al. Our study provides evidence that the mouse retina shows regional adaptations in signal processing, enhancing their ability to detect prey during hunting. |
| License | Creative Commons Attribution-NonCommercial-ShareAlike 4.0 (https://creativecommons.org/licenses/by-nc-sa/4.0/) |
| References |
Sustained ON alpha retinal ganglion cells in the temporal retina exhibit task-specific regional adaptions in dendritic signal integration [doi:10.1101/2024.03.27.586958] (IsSupplementTo)
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| Funding |
DFG; BE 5601/6-1
DFG; BE 5601/9-1 DFG; EU 42/10-1 DFG; EU 42/12-1 NSFC; YR 32200810 MPG |
| Keywords |
Neuroscience
Retinal ganglion cells Visual ecology Regional circuit adaptations |
| Resource Type |
Dataset |