doi/natfeedback_code_eLife: Data and code for "Robust effects of corticothalamic feedback and behavioral state on movie responses in mouse dLGN" @ 34188b87b8bcf8665599f90b1762c8f3dcca7dc9

Data and code for "Robust effects of corticothalamic feedback and behavioral state on movie responses in mouse dLGN"

Martin Spacek 34188b87b8 Remove ntsr_unit_celltypes_yannik.csv		2 jaren geleden
csv	34188b87b8 Remove ntsr_unit_celltypes_yannik.csv	2 jaren geleden
pickles	1c15e1f2f2 Initial commit copied over from natfeedback_code 2022-02-07 rev 9eabb0	2 jaren geleden
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README.md	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	2 jaren geleden
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fig1S33S1.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	2 jaren geleden
fig1S4.py	1c15e1f2f2 Initial commit copied over from natfeedback_code 2022-02-07 rev 9eabb0	2 jaren geleden
fig1S5.py	1c15e1f2f2 Initial commit copied over from natfeedback_code 2022-02-07 rev 9eabb0	2 jaren geleden
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main.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	2 jaren geleden
util.py	08505455c2 Clean up irrelevant comments & code blocks, fix .csv filenames	2 jaren geleden

Data and code for Spacek et. al., 2021, "Robust effects of corticothalamic feedback during naturalistic visual stimulation", submitted to eLife.

https://www.biorxiv.org/content/10.1101/776237v5

Use main.py to load data for all LGN opto experiments as a function of stimulus type (movies, gratings), run state, and opto state. Data are loaded from pandas DataFrames, which are saved as Python pickles in the pickles folder.

Run main.py at the IPython command line, or in Jupyter; the -i runs scripts in IPython/Jupyter's namespace instead of an empty one:

run -i main.py

pvmvis (default) or ntsrmvis can be provided as an --exptype= argument to this main.py, to load and then plot PV-Cre (most of the paper) or Ntsr1-Cre (Fig S5) data, respectively.

Results can be plotted by executing the desired figx.py file in the same namespace:

run -i fig1.py
run -i fig2.py
run -i fig3.py
run -i fig4.py
run -i fig5.py
run -i fig6.py

Not all supplementary panels/figures have their own script, some are integrated into their parent figure's script for convenience:

run -i fig1S33S1.py
run -i fig1S4.py
run -i fig4S1.py
run -i ipos.py

Note that depending on your system, you may have to call plt.show() to actually display figure windows after running one or more of the above scripts. Use cf() to quickly close all figures.

README.md