Aitor Morales-Gregorio a.morales-gregorio@fz-juelich.de
51445b6649
Welcome to the V1-V4 resting state data repository
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2 years ago | |
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| .. | ||
| NPMK | 2 years ago | |
| analysis_scripts | 2 years ago | |
| runstim_scripts | 2 years ago | |
| README.md | 2 years ago | |
README.md
Matlab scripts
This directory contains all matlab code used to preprocess the data. In particular related to the experiment control, data alignment across different recording machines and generation of metadata (SNR, RF).
For a detailed description of the scripts please refer to the manuscript.
Dependencies
Matlab R2019b was used to generate the scripts in this folder. The only dependency is the NPMK code package from Blackrock Microsystems. We here included a copy of the package, to which minor modifications were made (mostly suppressing user intervention in file creation). The NPMK package can be installed as follows, in a matlab terminal
cd NPMK
installNPMK.m
Most of the matlab scripts should also be executable with the open source programming language Octave.
Experiment control scripts
The experiment control scripts (runstim_scripts) here included will most likely not be executable
by the user, since they are tuned to specific hardware in the experiment. We
provide the scripts for completeness. Assistance with executing this scripts can be
provided by the corresponding authors upon reasonable request.
| datacite.yml | |
|---|---|
| Title | 1024-channel electrophysiological recordings in macaque V1 and V4 during resting state |
| Authors |
Chen,Xing;Department of Vision & Cognition, Netherlands Institute for Neuroscience, Meibergdreef 47, 1105 BA, Amsterdam, Netherlands;ORCID:0000-0002-3589-1750
Morales-Gregorio,Aitor;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Institute of Zoology, University of Cologne, Cologne, Germany;ORCID:0000-0002-2403-928X Sprenger,Julia;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany; and Institut de Neurosciences de La Timone, CNRS & Aix-Marseille University, Marseille, France;ORCID:0000-0002-9986-7477 Kleinjohann,Alexander;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany;ORCID:0000-0003-3776-4226 Sridhar,Shashwat;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany;ORCID:0000-0002-8837-8555 van Albada,Sacha;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Institute of Zoology, University of Cologne, Cologne, Germany;ORCID:0000-0003-0682-4855 Grün,Sonja;Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) and JARA Institute Brain Structure-Function Relationships (INM-10), Jülich Research Centre, Jülich, Germany; and Theoretical Systems Neurobiology, RWTH Aachen University, Aachen, Germany;ORCID:0000-0003-2829-2220 Roelfsema,Pieter;Department of Vision & Cognition, Netherlands Institute for Neuroscience, Meibergdreef 47, 1105 BA, Amsterdam, Netherlands; Department of Integrative Neurophysiology, VU University, De Boelelaan 1085, 1081 HV, Amsterdam, Netherlands; and Department of Psychiatry, Academic Medical Center, Postbus 22660, 1100 DD, Amsterdam, Netherlands;ORCID:0000-0002-1625-0034 |
| Description | We provide electrophysiological recordings in Macaque V1 and V4 cortex with 16 Utah arrays in two subjects. |
| License | CC BY 4.0 (https://creativecommons.org/licenses/by/4.0/) |
| References |
Chen, X., Morales-Gregorio, A., Sprenger, J., Kleinjohann, A., Sridhar, S., van Albada, S. J., Grün, S., Roelfsema, P. R. (2021). 1024-channel electrophysiological recordings in macaque V1 and V4 during resting state. In preparation. [doi::tba] (IsSupplementTo)
Chen, X., Wang, F., Fernandez, E., Roelfsema, P. R. (2020). Shape perception via a high-channel-count neuroprosthesis in monkey visual cortex. Science Vol. 370, Issue 6521, pp. 1191-1196. [doi:10.1126/science.abd7435] (IsReferencedBy) |
| Funding |
NWO, STW, P15-42
HBP, FPA (650003) EU, ERC, 339490 EU H2020 Framework Programme for Research and Innovation, HBP SGA2, 785907 EU H2020 Framework Programme for Research and Innovation, HBP SGA3, 945539 DFG, 368482240/RTG 2416 |
| Keywords |
Electrophysiology
Local Field Potential Macaque Multiunit activity Neuroscience Resting state Synchrofact removal Utah Array Visual area 1 (V1) Visual area 4 (V4) Visual Cortex |
| Resource Type |
Dataset |