processSpectralPower.m 66 KB

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  1. addpath('./support_routines');
  2. addpath(genpath('./support_tools'));
  3. clear all; close all; clc;
  4. sSubjectName='monkey 2';
  5. sVisualArea='V4';
  6. subjectInfos=getSubjectInfos(sSubjectName);
  7. subjectData=getSubjectData(sSubjectName,sVisualArea,'ALL','LFPs','ALL');
  8. SAMPLING_FREQ=1017.38;
  9. NUM_TIME_SAMPLES=512;
  10. NUM_FREQ_SAMPLES=NUM_TIME_SAMPLES/2+1;
  11. timeAxisPostCue=linspace(0,NUM_TIME_SAMPLES/SAMPLING_FREQ,NUM_TIME_SAMPLES);
  12. timeAxisPreStim=linspace(-NUM_TIME_SAMPLES/SAMPLING_FREQ,0,NUM_TIME_SAMPLES);
  13. lamLayerTag={'Supra','Granr','Infra'};
  14. gratCondTag={'RF','OUT1','OUT2'};
  15. spectWinTag={'Full'};
  16. plotPmtsSinglePens=0;
  17. plotPmtsPenAvg=0;
  18. plotPmtsPenAvgOutMean=1;
  19. plotPmtsPenAvgColorCoded=0;
  20. for reportPmtMinusMean=1%0:1
  21. % reportPmtMinusMean allows to choose how to apply baseline normalization
  22. % 0 reports (Pmt) ./ (MeanPmtbaseline)
  23. % 1 reports (Pmt - MeanPmtbaseline)./(stdPmtbaseline)
  24. %% compute Pmts
  25. paramsMT=[];
  26. paramsMT.Fs=SAMPLING_FREQ;
  27. paramsMT.tapers = [2 3];
  28. paramsMt.pad = 0;
  29. [~,freqAxisPreStim] = mtspectrumc(timeAxisPreStim*1e-3, paramsMT);
  30. [~,freqAxisPostCue] = mtspectrumc(timeAxisPostCue*1e-3, paramsMT);
  31. pr=1;
  32. for pp=1:length(subjectData.penIDs) % LOOP OVER PENS
  33. if ~isempty(subjectData.LfpStruct(pp).Sorted)
  34. for bb=1%:4 % LOOP OVER SPECTRAL WINS
  35. for ll=1:3 % LOOP OVER LAMINAR LAYERS
  36. for cnd=1:3 % LOOP OVER GRAT CONDITIONS
  37. if bb==1
  38. currLFPsPreStim=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreStimDataBi(:,:,end-NUM_TIME_SAMPLES+1:end);
  39. currLFPsPostStim=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PostStimDataBi(:,:,1:NUM_TIME_SAMPLES);
  40. currLFPsStationary=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).StationaryDataBi(:,:,1:NUM_TIME_SAMPLES);
  41. currLFPsPostCue=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PostCueDataBi(:,:,1:NUM_TIME_SAMPLES);
  42. currLFPsPreFirstDim=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreFirstDimDataBi(:,:,end-NUM_TIME_SAMPLES+1:end);
  43. % SELECT GRATCONDS 2, 3, 4, 5, 9, 11, 15, 17, 20, 21, 22, 23, 27, 29, 33, 35
  44. if ~isempty(subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreSecondDimDataBi)
  45. currNumTrials2=length(subjectData.LfpStruct(pp).Sorted.Full.(lamLayerTag{ll}).(gratCondTag{cnd}).gratCondSecondDim);
  46. currCorrectSecondDimTrials=find(arrayfun(@(jj) any([2 3 4 5 20 21 22 23 9 11 15 17 27 29 33 35]==subjectData.LfpStruct(pp).Sorted.Full.(lamLayerTag{ll}).(gratCondTag{cnd}).gratCondSecondDim(jj)), 1:currNumTrials2));
  47. currLFPsPreSecondDim=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreSecondDimDataBi(:,currCorrectSecondDimTrials,end-NUM_TIME_SAMPLES+1:end);
  48. else
  49. currLFPsPreSecondDim=[];
  50. end
  51. % PROBABLY TO FIX FOR THIRD DIM
  52. if ~isempty(subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreThirdDimDataBi)
  53. currNumTrials3=length(subjectData.LfpStruct(pp).Sorted.Full.(lamLayerTag{ll}).(gratCondTag{cnd}).gratCondThirdDim);
  54. currCorrectThirdDimTrials=find(arrayfun(@(jj) any([2 3 4 5 20 21 22 23 9 11 15 17 27 29 33 35]==subjectData.LfpStruct(pp).Sorted.Full.(lamLayerTag{ll}).(gratCondTag{cnd}).gratCondThirdDim(jj)), 1:currNumTrials3));
  55. currLFPsPreThirdDim=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreThirdDimDataBi(:,currCorrectThirdDimTrials,end-NUM_TIME_SAMPLES+1:end);
  56. else
  57. currLFPsPreThirdDim=[];
  58. end
  59. currNumChs=size(currLFPsPreStim,1); currNumTrials=size(currLFPsPreFirstDim,2);
  60. currNumTrials2=size(currLFPsPreSecondDim,2); currNumTrials3=size(currLFPsPreThirdDim,2);
  61. else
  62. currLFPsPostStimZSc=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PostStimDataBiZSc(:,:,1:NUM_TIME_SAMPLES);
  63. currLFPsStationaryZSc=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).StationaryDataBiZSc(:,:,1:NUM_TIME_SAMPLES);
  64. currLFPsPostCueZSc=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PostCueDataBiZSc(:,:,1:NUM_TIME_SAMPLES);
  65. currLFPsPreFirstDimZSc=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreFirstDimDataBiZSc(:,:,end-NUM_TIME_SAMPLES+1:end);
  66. % SELECT GRATCONDS 2, 3, 4, 5, 9, 11, 15, 17, 20, 21, 22, 23, 27, 29, 33, 35
  67. if ~isempty(subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreSecondDimDataBiZSc)
  68. currNumTrials2=length(subjectData.LfpStruct(pp).Sorted.Full.(lamLayerTag{ll}).(gratCondTag{cnd}).gratCondSecondDim);
  69. currCorrectSecondDimTrials=find(arrayfun(@(jj) any([2 3 4 5 20 21 22 23 9 11 15 17 27 29 33 35]==subjectData.LfpStruct(pp).Sorted.Full.(lamLayerTag{ll}).(gratCondTag{cnd}).gratCondSecondDim(jj)), 1:currNumTrials2));
  70. currLFPsPreSecondDimZSc=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreSecondDimDataBiZSc(:,currCorrectSecondDimTrials,end-NUM_TIME_SAMPLES+1:end);
  71. else
  72. currLFPsPreSecondDimZSc=[];
  73. end
  74. % PROBABLY TO FIX FOR THIRD DIM
  75. if ~isempty(subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreThirdDimDataBiZSc)
  76. currNumTrials3=length(subjectData.LfpStruct(pp).Sorted.Full.(lamLayerTag{ll}).(gratCondTag{cnd}).gratCondThirdDim);
  77. currCorrectThirdDimTrials=find(arrayfun(@(jj) any([2 3 4 5 20 21 22 23 9 11 15 17 27 29 33 35]==subjectData.LfpStruct(pp).Sorted.Full.(lamLayerTag{ll}).(gratCondTag{cnd}).gratCondThirdDim(jj)), 1:currNumTrials3));
  78. currLFPsPreThirdDimZSc=subjectData.LfpStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreThirdDimDataBiZSc(:,currCorrectThirdDimTrials,end-NUM_TIME_SAMPLES+1:end);
  79. else
  80. currLFPsPreThirdDimZSc=[];
  81. end
  82. currNumChs=size(currLFPsPreFirstDimZSc,1); currNumTrials=size(currLFPsPreFirstDimZSc,2);
  83. currNumTrials2=size(currLFPsPreSecondDimZSc,2); currNumTrials3=size(currLFPsPreThirdDimZSc,2);
  84. end
  85. currPmtPrSt=nan(currNumChs,currNumTrials,NUM_FREQ_SAMPLES);
  86. currPmtPsSt=nan(currNumChs,currNumTrials,NUM_FREQ_SAMPLES);
  87. currPmtStat=nan(currNumChs,currNumTrials,NUM_FREQ_SAMPLES);
  88. currPmtPsCu=nan(currNumChs,currNumTrials,NUM_FREQ_SAMPLES);
  89. currPmtPFDm=nan(currNumChs,currNumTrials,NUM_FREQ_SAMPLES);
  90. currPmtPostStimZSc=nan(currNumChs,currNumTrials,NUM_FREQ_SAMPLES);
  91. currPmtStationaryZSc=nan(currNumChs,currNumTrials,NUM_FREQ_SAMPLES);
  92. currPmtPostCueZSc=nan(currNumChs,currNumTrials,NUM_FREQ_SAMPLES);
  93. currPmtPreFirstDimZSc=nan(currNumChs,currNumTrials,NUM_FREQ_SAMPLES);
  94. currPmtPreSecondDimZSc=nan(currNumChs,currNumTrials2,NUM_FREQ_SAMPLES);
  95. currPmtPreThirdDimZSc=nan(currNumChs,currNumTrials3,NUM_FREQ_SAMPLES);
  96. for ch=1:currNumChs
  97. if bb==1
  98. % FULL BAND CASE: Pmt of LFPs ZScored in frequency domain
  99. currPmtPreStim=mtspectrumc(squeeze(currLFPsPreStim(ch,:,:))',paramsMT)';
  100. currPmtPostStim=mtspectrumc(squeeze(currLFPsPostStim(ch,:,:))',paramsMT)';
  101. currPmtStationary=mtspectrumc(squeeze(currLFPsStationary(ch,:,:))',paramsMT)';
  102. currPmtPostCue=mtspectrumc(squeeze(currLFPsPostCue(ch,:,:))',paramsMT)';
  103. currPmtPreFirstDim=mtspectrumc(squeeze(currLFPsPreFirstDim(ch,:,:))',paramsMT)';
  104. currPmtPreSecondDim=mtspectrumc(squeeze(currLFPsPreSecondDim(ch,:,:))',paramsMT)';
  105. currPmtPreThirdDim=mtspectrumc(squeeze(currLFPsPreThirdDim(ch,:,:))',paramsMT)';
  106. currPmtPreStimRepMean=repmat(nanmean(currPmtPreStim,1),currNumTrials,1);
  107. currPmtPreStimRepStd=repmat(nanstd(currPmtPreStim,[],1),currNumTrials,1);
  108. %TRY ALSO
  109. % data=iddata(y,[],Ts)cw
  110. % Py=spa(data,winsize,freq)
  111. if reportPmtMinusMean
  112. currPmtPostStimZSc(ch,:,:)=(currPmtPostStim-currPmtPreStimRepMean)./(currPmtPreStimRepStd+eps);
  113. currPmtStationaryZSc(ch,:,:)=(currPmtStationary-currPmtPreStimRepMean)./(currPmtPreStimRepStd+eps);
  114. currPmtPostCueZSc(ch,:,:)=(currPmtPostCue-currPmtPreStimRepMean)./(currPmtPreStimRepStd+eps);
  115. currPmtPreFirstDimZSc(ch,:,:)=(currPmtPreFirstDim-currPmtPreStimRepMean)./(currPmtPreStimRepStd+eps);
  116. currPmtPreSecondDimZSc(ch,:,:)=(currPmtPreSecondDim-currPmtPreStimRepMean(1:currNumTrials2,:))./(currPmtPreStimRepStd(1:currNumTrials2,:)+eps);
  117. currPmtPreThirdDimZSc(ch,:,:)=(currPmtPreThirdDim-currPmtPreStimRepMean(1:currNumTrials3,:))./(currPmtPreStimRepStd(1:currNumTrials3,:)+eps);
  118. else
  119. currPmtPostStimZSc(ch,:,:)=(currPmtPostStim)./(currPmtPreStimRepMean+eps);
  120. currPmtStationaryZSc(ch,:,:)=(currPmtStationary)./(currPmtPreStimRepMean+eps);
  121. currPmtPostCueZSc(ch,:,:)=(currPmtPostCue)./(currPmtPreStimRepMean+eps);
  122. currPmtPreFirstDimZSc(ch,:,:)=(currPmtPreFirstDim)./(currPmtPreStimRepMean+eps);
  123. currPmtPreSecondDimZSc(ch,:,:)=(currPmtPreSecondDim(1:currNumTrials2,:))./(currPmtPreStimRepMean(1:currNumTrials2,:)+eps);
  124. currPmtPreThirdDimZSc(ch,:,:)=(currPmtPreThirdDim(1:currNumTrials3,:))./(currPmtPreStimRepMean(1:currNumTrials3,:)+eps);
  125. end
  126. currPmtPrSt(ch,:,:)=currPmtPreStim;
  127. currPmtPsSt(ch,:,:)=currPmtPostStim;
  128. currPmtStat(ch,:,:)=currPmtStationary;
  129. currPmtPsCu(ch,:,:)=currPmtPostCue;
  130. currPmtPFDm(ch,:,:)=currPmtPreFirstDim;
  131. else
  132. % ALPHA, BETA, GAMMA BAND CASES: Pmt of LFPs ZScored in time domain
  133. currPmtPostStimZSc(ch,:,:)=mtspectrumc(squeeze(currLFPsPostStimZSc(ch,:,:))',paramsMT)';
  134. currPmtStationaryZSc(ch,:,:)=mtspectrumc(squeeze(currLFPsStationaryZSc(ch,:,:))',paramsMT)';
  135. currPmtPostCueZSc(ch,:,:)=mtspectrumc(squeeze(currLFPsPostCueZSc(ch,:,:))',paramsMT)';
  136. currPmtPreFirstDimZSc(ch,:,:)=mtspectrumc(squeeze(currLFPsPreFirstDimZSc(ch,:,:))',paramsMT)';
  137. currPmtPreSecondDimZSc(ch,:,:)=mtspectrumc(squeeze(currLFPsPreSecondDimZSc(ch,:,:))',paramsMT)';
  138. currPmtPreThirdDimZSc(ch,:,:)=mtspectrumc(squeeze(currLFPsPreThirdDimZSc(ch,:,:))',paramsMT)';
  139. end
  140. end
  141. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PostStimZSc=permute(nanmean(currPmtPostStimZSc,2),[1 3 2]);
  142. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).StationaryZSc=permute(nanmean(currPmtStationaryZSc,2),[1 3 2]);
  143. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PostCueZSc=permute(nanmean(currPmtPostCueZSc,2),[1 3 2]);
  144. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreFirstDimZSc=permute(nanmean(currPmtPreFirstDimZSc,2),[1 3 2]);
  145. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreSecondDimZSc=permute(nanmean(currPmtPreSecondDimZSc,2),[1 3 2]);
  146. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreThirdDimZSc=permute(nanmean(currPmtPreThirdDimZSc,2),[1 3 2]);
  147. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PrStim=permute(nanmean(currPmtPrSt,2),[1 3 2]);
  148. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PsStim=permute(nanmean(currPmtPsSt,2),[1 3 2]);
  149. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).Statry=permute(nanmean(currPmtStat,2),[1 3 2]);
  150. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PstCue=permute(nanmean(currPmtPsCu,2),[1 3 2]);
  151. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PrFDim=permute(nanmean(currPmtPFDm,2),[1 3 2]);
  152. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(subjectData.penInfos(pp).grcColorOrder).PostStimZSc=permute(nanmean(currPmtPostStimZSc,2),[1 3 2]);
  153. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(subjectData.penInfos(pp).grcColorOrder).StationaryZSc=permute(nanmean(currPmtStationaryZSc,2),[1 3 2]);
  154. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(subjectData.penInfos(pp).grcColorOrder).PostCueZSc=permute(nanmean(currPmtPostCueZSc,2),[1 3 2]);
  155. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(subjectData.penInfos(pp).grcColorOrder).PreFirstDimZSc=permute(nanmean(currPmtPreFirstDimZSc,2),[1 3 2]);
  156. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(subjectData.penInfos(pp).grcColorOrder).PreSecondDimZSc=permute(nanmean(currPmtPreSecondDimZSc,2),[1 3 2]);
  157. PmtStruct(pr).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(subjectData.penInfos(pp).grcColorOrder).PreThirdDimZSc=permute(nanmean(currPmtPreThirdDimZSc,2),[1 3 2]);
  158. clear -regexp ^curr % saves memory at runtime
  159. end
  160. end
  161. end
  162. pr=pr+1;
  163. end
  164. end
  165. %% PLOT SINGLE PENs
  166. if plotPmtsSinglePens
  167. rgbCmap=eye(3);
  168. timeWinTag={'PostStim','Stationary','PostCue','PreFirstDim','PreSecondDim','PreThirdDim'};
  169. close all
  170. for pp=1:length(subjectData.penIDs) % LOOP OVER PENS
  171. for bb=1%:4 % LOOP OVER SPECTRAL WINS
  172. hfig=figure('units','normalized','outerposition',[0 0 1 1]);
  173. yaxislim=0;
  174. for tt=1:6
  175. for ll=1:3 % LOOP OVER LAMINAR LAYERS
  176. subplot(3,6,(ll-1)*6+tt)
  177. for cnd=1:3 % LOOP OVER GRAT CONDITIONS
  178. plotcmapdots(rgbCmap);
  179. plotmsem(freqAxisPostCue,PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).([timeWinTag{tt} 'ZSc']),rgbCmap(cnd,:)); hold on;
  180. title([timeWinTag{tt} ' - ' lamLayerTag{ll} ' Layer']);
  181. yaxislim=max([yaxislim; max(nanmean(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).([timeWinTag{tt} 'ZSc']),1))]);
  182. if bb==1
  183. xlim([0 128]); ylim([-1 10]);
  184. ylabel('Z-Scored Power');
  185. elseif bb==2
  186. xlim([0 20]); %ylim([0 0.05]);
  187. ylabel('Spectral Power');
  188. elseif bb==3
  189. xlim([10 35]); %ylim([0 0.05*2/3]);
  190. ylabel('Spectral Power');
  191. elseif bb==4
  192. xlim([20 100]); %ylim([0 0.05/3]);
  193. ylabel('Spectral Power');
  194. end
  195. xlabel('Frequency [Hz]');
  196. end
  197. end
  198. end
  199. if bb>1
  200. for yl=1:18; subplot(3,6,yl); ylim([0 yaxislim+0.002]); end
  201. else
  202. for yl=1:18; subplot(3,6,yl); ylim([-1 yaxislim+1]); end
  203. end
  204. legend('Attend RF','Attend OUT1','Attend OUT2');
  205. supertitle([sSubjectName ' ' sVisualArea ' - PEN ' num2str(subjectData.penIDs(pp)) ' - LFPs Spectral Power ' spectWinTag{bb} ' Band']);
  206. %saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/SinglePens' sSubjectName(1) sVisualArea '-PEN' num2str(subjectData.penIDs(pp)) '-Pmt-' spectWinTag{bb} '.fig']);
  207. %saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/SinglePens/' sSubjectName(1) sVisualArea '-PEN' num2str(subjectData.penIDs(pp)) '-Pmt-' spectWinTag{bb} '.png']);
  208. end
  209. close all
  210. end
  211. end
  212. %% POOL CHANNELS ACROSS PENs
  213. for bb=1%:4
  214. for ll=1:3
  215. for cnd=1:3
  216. currPmtPostStimZSc=[];
  217. currPmtStationaryZSc=[];
  218. currPmtPostCueZSc=[];
  219. currPmtPreFirstDimZSc=[];
  220. currPmtPreSecondDimZSc=[];
  221. currPmtPreThirdDimZSc=[];
  222. currPmtPreStim=[];
  223. currPmtPostStim=[];
  224. currPmtStationary=[];
  225. currPmtPostCue=[];
  226. currPmtPreFirstDim=[];
  227. for pp=1:length(PmtStruct)
  228. %currSz=size(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreFirstDimZSc);
  229. %currSz2=size(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreSecondDimZSc);
  230. %currSz3=size(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreThirdDimZSc);
  231. currPmtPreStim= [currPmtPreStim; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PrStim];
  232. currPmtPostStim= [currPmtPostStim; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PsStim];
  233. currPmtStationary= [currPmtStationary; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).Statry];
  234. currPmtPostCue= [currPmtPostCue; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PstCue];
  235. currPmtPreFirstDim= [currPmtPreFirstDim; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PrFDim];
  236. currPmtPostStimZSc= [currPmtPostStimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PostStimZSc];
  237. currPmtStationaryZSc= [currPmtStationaryZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).StationaryZSc];
  238. currPmtPostCueZSc= [currPmtPostCueZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PostCueZSc];
  239. currPmtPreFirstDimZSc= [currPmtPreFirstDimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreFirstDimZSc];
  240. currPmtPreSecondDimZSc= [currPmtPreSecondDimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreSecondDimZSc];
  241. currPmtPreThirdDimZSc= [currPmtPreThirdDimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreThirdDimZSc];
  242. end
  243. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PostStimZSc=currPmtPostStimZSc;
  244. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).StationaryZSc=currPmtStationaryZSc;
  245. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PostCueZSc=currPmtPostCueZSc;
  246. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreFirstDimZSc=currPmtPreFirstDimZSc;
  247. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreSecondDimZSc=currPmtPreSecondDimZSc;
  248. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreThirdDimZSc=currPmtPreThirdDimZSc;
  249. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PrStim=currPmtPreStim;
  250. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PsStim=currPmtPostStim;
  251. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).Statry=currPmtStationary;
  252. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PstCue=currPmtPostCue;
  253. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PrFDim=currPmtPreFirstDim;
  254. clear -regexp ^curr % saves memory at runtime
  255. end
  256. end
  257. end
  258. % save(['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PowSpectsAllTimeWins.mat' ],'PoolPmtStruct')
  259. % %% SAME AS ABOVE BUT RF COLOR-SPECIFIC
  260. % grcColorLabel={'RGB','GRB','BGR'};
  261. % f
  262. % %penColorsRFlabels={};
  263. % %penColorsRFlabnum=nan(1,length(PmtStruct));
  264. % %for pp=1:length(PmtStruct)
  265. % % penColorsRF{pp}=subjectInfos.penInfos(pp).grcColorOrder(1);
  266. % % penColorsRFlabnum(pp)=strcmpi(subjectInfos.penInfos(pp).grcColorOrder(1),'R')+...
  267. % % strcmpi(subjectInfos.penInfos(pp).grcColorOrder(1),'G')*2+...
  268. % % strcmpi(subjectInfos.penInfos(pp).grcColorOrder(1),'B')*3;
  269. % %end
  270. %
  271. % for bb=1%:4
  272. % for ll=1:3
  273. % for cnd=1:3
  274. % for grc=1:3
  275. % currPmtPostStimZSc=[];
  276. % currPmtStationaryZSc=[];
  277. % currPmtPostCueZSc=[];
  278. % currPmtPreFirstDimZSc=[];
  279. % currPmtPreSecondDimZSc=[];
  280. % currPmtPreThirdDimZSc=[];
  281. % for pp=1:length(PmtStruct)
  282. % %if strcmpi(subjectData.penInfos(pp).grcColorOrder(1),grcColorLabel{grc})
  283. % %currSz=size(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreFirstDimZSc);
  284. % %currSz2=size(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreSecondDimZSc);
  285. % %currSz3=size(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreThirdDimZSc);
  286. % if isfield(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}),grcColorLabel{grc})
  287. % currPmtPostStimZSc=[currPmtPostStimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).PostStimZSc];
  288. % currPmtStationaryZSc=[currPmtStationaryZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).StationaryZSc];
  289. % currPmtPostCueZSc=[currPmtPostCueZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).PostCueZSc];
  290. % currPmtPreFirstDimZSc=[currPmtPreFirstDimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).PreFirstDimZSc];
  291. % currPmtPreSecondDimZSc=[currPmtPreSecondDimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).PreSecondDimZSc];
  292. % currPmtPreThirdDimZSc=[currPmtPreThirdDimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).PreThirdDimZSc];
  293. % end
  294. % end
  295. % PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).PostStimZSc=currPmtPostStimZSc;
  296. % PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).StationaryZSc=currPmtStationaryZSc;
  297. % PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).PostCueZSc=currPmtPostCueZSc;
  298. % PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).PreFirstDimZSc=currPmtPreFirstDimZSc;
  299. % PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).PreSecondDimZSc=currPmtPreSecondDimZSc;
  300. % PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel{grc}).PreThirdDimZSc=currPmtPreThirdDimZSc;
  301. %
  302. % clear -regexp ^curr % saves memory at runtime
  303. % end
  304. % end
  305. % end
  306. % end
  307. %
  308. % clearvars curr*
  309. %% SAME AS ABOVE BUT COLOR-SPECIFIC
  310. grcColorLabel3={'RGB','RBG','GRB','GBR','BRG','BGR'};
  311. for bb=1%:4
  312. for ll=1:3
  313. for cnd=1:3
  314. for grc=1:6%3
  315. currPmtPostStimZSc=[];
  316. currPmtStationaryZSc=[];
  317. currPmtPostCueZSc=[];
  318. currPmtPreFirstDimZSc=[];
  319. currPmtPreSecondDimZSc=[];
  320. currPmtPreThirdDimZSc=[];
  321. for pp=1:length(PmtStruct)
  322. %if strcmpi(subjectData.penInfos(pp).grcColorOrder,grcColorLabel3{grc})
  323. %strcmpi(subjectInfos.penInfos(pp).grcColorOrder(1),grcColorLabel{grc})
  324. %currSz=size(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreFirstDimZSc);
  325. %currSz2=size(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreSecondDimZSc);
  326. %currSz3=size(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).PreThirdDimZSc);
  327. if isfield(PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}),grcColorLabel3{grc})
  328. currPmtPostStimZSc= [currPmtPostStimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).PostStimZSc];
  329. currPmtStationaryZSc= [currPmtStationaryZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).StationaryZSc];
  330. currPmtPostCueZSc= [currPmtPostCueZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).PostCueZSc];
  331. currPmtPreFirstDimZSc= [currPmtPreFirstDimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).PreFirstDimZSc];
  332. currPmtPreSecondDimZSc= [currPmtPreSecondDimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).PreSecondDimZSc];
  333. currPmtPreThirdDimZSc= [currPmtPreThirdDimZSc; PmtStruct(pp).Sorted.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).PreThirdDimZSc];
  334. end
  335. end
  336. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).PostStimZSc=currPmtPostStimZSc;
  337. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).StationaryZSc=currPmtStationaryZSc;
  338. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).PostCueZSc=currPmtPostCueZSc;
  339. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).PreFirstDimZSc=currPmtPreFirstDimZSc;
  340. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).PreSecondDimZSc=currPmtPreSecondDimZSc;
  341. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{grc}).PreThirdDimZSc=currPmtPreThirdDimZSc;
  342. clear -regexp ^curr % saves memory at runtime
  343. end
  344. end
  345. end
  346. end
  347. clearvars curr*
  348. %% PLOT MEAN ACROSS PENS
  349. if plotPmtsPenAvg
  350. timeWinTag={'PostStim','Stationary','PostCue','PreFirstDim','PreSecondDim','PreThirdDim'};
  351. rgbCmap=eye(3);
  352. close all
  353. for bb=1%:4
  354. hfig=figure('units','normalized','outerposition',[0 0 1 1]);
  355. for tt=1:6
  356. for ll=1:3
  357. currSpectPowRF=PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.([timeWinTag{tt} 'ZSc']);
  358. currSpectPowOUT=nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.([timeWinTag{tt} 'ZSc']),...
  359. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.([timeWinTag{tt} 'ZSc'])),4);
  360. numPooledChs=size(currSpectPowRF,1);
  361. subplot(3,6,(ll-1)*6+tt);
  362. plotcmapdots([eye(3); .5 .5 .5]);
  363. if reportPmtMinusMean
  364. plot(freqAxisPostCue,zeros(1,length(freqAxisPostCue)),'k');
  365. end
  366. for cnd=1:(1+2*double(tt<6)) % Pre3rdDim is just RF
  367. plotmsem(freqAxisPostCue,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).([timeWinTag{tt} 'ZSc']),rgbCmap(cnd,:)); hold on;
  368. end
  369. title([timeWinTag{tt} ' - ' lamLayerTag{ll} ' Layer']);
  370. if bb==1
  371. xlim([0 100]);
  372. if strcmp(sVisualArea,'V1')
  373. if reportPmtMinusMean
  374. ylim([-1 8]);
  375. else
  376. ylim([0 8]);
  377. end
  378. else
  379. if reportPmtMinusMean
  380. ylim([-1 2.5]);
  381. else
  382. ylim([0 2.5]);
  383. end
  384. end
  385. elseif bb==2
  386. xlim([0 20]); ylim([0 0.025]);
  387. ylabel('Spectral Power');
  388. elseif bb==3
  389. xlim([10 35]); ylim([0 0.015]);
  390. ylabel('Spectral Power');
  391. elseif bb==4
  392. xlim([20 100]); ylim([0 0.006]);
  393. ylabel('Spectral Power');
  394. end
  395. if ll==3; xlabel('Frequency [Hz]'); end;
  396. if tt==1; ylabel('Baseline-Normalized Power');
  397. if strcmp(sVisualArea,'V1')
  398. text(3,7.5,['n=' num2str(numPooledChs) ';']);
  399. else
  400. text(3,2.3,['n=' num2str(numPooledChs) ';']);
  401. end
  402. end
  403. if tt<6
  404. freqIndices2Plot=find(freqAxisPostCue<=100);
  405. pValuesVec=nan(1,length(freqIndices2Plot));
  406. for ff=1:length(freqIndices2Plot)
  407. pValuesVec(ff)=signrank(currSpectPowRF(:,ff),currSpectPowOUT(:,ff));
  408. end
  409. [~,~,~,pValuesVecFDR]=fdr_bh(pValuesVec);
  410. pValuesBar05FDR=nan(1,length(freqIndices2Plot));
  411. if reportPmtMinusMean
  412. pValuesBar05FDR(pValuesVecFDR<=.05)=-1;
  413. else
  414. pValuesBar05FDR(pValuesVecFDR<=.05)=0;
  415. end
  416. plot(freqAxisPostCue(freqIndices2Plot),pValuesBar05FDR,'color',[.5 .5 .5],'linewidth',2.5);
  417. end
  418. set(gca,'XTick',0:20:100);%set(gca,'XTickLabel',{'0','10','20','30','40','50','60','70','80','90','100'});
  419. end
  420. end
  421. legend('RF','OUT1','OUT2','p\leq 0.05');
  422. supertitle([sSubjectName ' ' sVisualArea ' - Avg across PENs - LFPs Spectral Power ' spectWinTag{bb} ' Band']);
  423. %if reportPmtMinusMean
  424. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.png']);
  425. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.fig']);
  426. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.svg']);
  427. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.fig']);
  428. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.png']);
  429. %else
  430. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.png']);
  431. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.fig']);
  432. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.svg']);
  433. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.fig']);
  434. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.png']);
  435. %end
  436. end
  437. end
  438. %%
  439. %% PLOT MEAN ACROSS PENS OUT=OUT1/2+OUT2/2
  440. if plotPmtsPenAvgOutMean
  441. timeWinTag={'PostStim','Stationary','PostCue','PreFirstDim','PreSecondDim','PreThirdDim'};
  442. rgbCmap=eye(3);
  443. close all
  444. for bb=1%:4
  445. hfig=figure('units','normalized','outerposition',[0 0 1 1]);
  446. for tt=1:6
  447. for ll=1:3
  448. currSpectPowRF=PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.([timeWinTag{tt} 'ZSc']);
  449. currSpectPowOUT=nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.([timeWinTag{tt} 'ZSc']),...
  450. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.([timeWinTag{tt} 'ZSc'])),4);
  451. numPooledChs=size(currSpectPowRF,1);
  452. subplot(3,6,(ll-1)*6+tt);
  453. plotcmapdots([1 0 0; 0 0 1; .5 .5 .5]);
  454. if reportPmtMinusMean
  455. plot(freqAxisPostCue,zeros(1,length(freqAxisPostCue)),'k');
  456. end
  457. plotmsem(freqAxisPostCue,currSpectPowRF,'r');
  458. if tt<6
  459. plotmsem(freqAxisPostCue,currSpectPowOUT,'b');
  460. end
  461. %for cnd=1:(1+2*double(tt<6)) % Pre3rdDim is just RF
  462. % plotmsem(freqAxisPostCue,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).([timeWinTag{tt} 'ZSc']),rgbCmap(cnd,:)); hold on;
  463. %end
  464. title([timeWinTag{tt} ' - ' lamLayerTag{ll} ' Layer']);
  465. if bb==1
  466. xlim([0 100]);
  467. if strcmp(sVisualArea,'V1')
  468. if reportPmtMinusMean
  469. ylim([-1 8]);
  470. else
  471. ylim([0 8]);
  472. end
  473. else
  474. if reportPmtMinusMean
  475. ylim([-1 2.5]);
  476. else
  477. ylim([0 2.5]);
  478. end
  479. end
  480. elseif bb==2
  481. xlim([0 20]); ylim([0 0.025]);
  482. ylabel('Spectral Power');
  483. elseif bb==3
  484. xlim([10 35]); ylim([0 0.015]);
  485. ylabel('Spectral Power');
  486. elseif bb==4
  487. xlim([20 100]); ylim([0 0.006]);
  488. ylabel('Spectral Power');
  489. end
  490. if ll==3; xlabel('Frequency [Hz]'); end;
  491. if tt==1; ylabel('Baseline-Normalized Power');
  492. if strcmp(sVisualArea,'V1')
  493. text(3,7.5,['n=' num2str(numPooledChs) ';']);
  494. else
  495. text(3,2.3,['n=' num2str(numPooledChs) ';']);
  496. end
  497. end
  498. if tt<6
  499. freqIndices2Plot=find(freqAxisPostCue<=100);
  500. pValuesVec=nan(1,length(freqIndices2Plot));
  501. for ff=1:length(freqIndices2Plot)
  502. pValuesVec(ff)=signrank(currSpectPowRF(:,ff),currSpectPowOUT(:,ff));
  503. end
  504. [~,~,~,pValuesVecFDR]=fdr_bh(pValuesVec);
  505. pValuesBar05FDR=nan(1,length(freqIndices2Plot));
  506. if reportPmtMinusMean
  507. pValuesBar05FDR(pValuesVecFDR<=.05)=-1;
  508. else
  509. pValuesBar05FDR(pValuesVecFDR<=.05)=0;
  510. end
  511. plot(freqAxisPostCue(freqIndices2Plot),pValuesBar05FDR,'color',[0 0 0],'linewidth',2.5);
  512. end
  513. set(gca,'XTick',0:20:100);%set(gca,'XTickLabel',{'0','10','20','30','40','50','60','70','80','90','100'});
  514. end
  515. end
  516. legend('RF','OUT','p\leq 0.05');
  517. supertitle([sSubjectName ' ' sVisualArea ' - Avg across PENs - LFPs Spectral Power ' spectWinTag{bb} ' Band']);
  518. if reportPmtMinusMean
  519. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg_OUT-Pmt-MinusMean-' spectWinTag{bb} '.png']);
  520. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg_OUT-Pmt-MinusMean-' spectWinTag{bb} '.fig']);
  521. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg_OUT-Pmt-MinusMean-' spectWinTag{bb} '.svg']);
  522. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.fig']);
  523. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.png']);
  524. else
  525. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.png']);
  526. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.fig']);
  527. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.svg']);
  528. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.fig']);
  529. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.png']);
  530. end
  531. end
  532. end
  533. %% PLOT MEAN ACROSS PENS OVERLAY FIRST DIM OUT=OUT1/2+OUT2/2, OVERLAYED PREFIRSTDIM
  534. if plotPmtsPenAvgOutMean
  535. timeWinTag={'PostStim','Stationary','PostCue','PreFirstDim','PreSecondDim','PreThirdDim'};
  536. rgbCmap=eye(3);
  537. for bb=1%:4
  538. hfig=figure('units','normalized','outerposition',[0 0 1 1]);
  539. for tt=1:3%6
  540. for ll=1:3
  541. currSpectPowRF=PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.([timeWinTag{tt} 'ZSc']);
  542. currSpectPowOUT=nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.([timeWinTag{tt} 'ZSc']),...
  543. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.([timeWinTag{tt} 'ZSc'])),4);
  544. numPooledChs=size(currSpectPowRF,1);
  545. subplot(3,3,(ll-1)*3+tt);
  546. plotcmapdots([1 0 0; 0 0 1; .5 .5 .5]);
  547. if reportPmtMinusMean
  548. plot(freqAxisPostCue,zeros(1,length(freqAxisPostCue)),'k');
  549. end
  550. plotmsem(freqAxisPostCue,currSpectPowRF,'r');
  551. if tt<6
  552. plotmsem(freqAxisPostCue,currSpectPowOUT,'b');
  553. end
  554. currSpectPowPFDRF=PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.PreFirstDimZSc;
  555. currSpectPowPFDOUT=nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.PreFirstDimZSc,...
  556. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.PreFirstDimZSc),4);
  557. plotmsem(freqAxisPostCue,currSpectPowPFDRF,'r:');
  558. plotmsem(freqAxisPostCue,currSpectPowPFDOUT,'b:');
  559. %for cnd=1:(1+2*double(tt<6)) % Pre3rdDim is just RF
  560. % plotmsem(freqAxisPostCue,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).([timeWinTag{tt} 'ZSc']),rgbCmap(cnd,:)); hold on;
  561. %end
  562. title([timeWinTag{tt} ' - ' lamLayerTag{ll} ' Layer']);
  563. if bb==1
  564. xlim([0 100]);
  565. if strcmp(sVisualArea,'V1')
  566. if reportPmtMinusMean
  567. if strcmpi(sSubjectName,'Wyman')
  568. ylim([-1 8]);
  569. else
  570. ylim([-.5 4]);
  571. end
  572. else
  573. ylim([0 8]);
  574. end
  575. else
  576. if reportPmtMinusMean
  577. ylim([-1 2.5]);
  578. else
  579. ylim([0 2.5]);
  580. end
  581. end
  582. elseif bb==2
  583. xlim([0 20]); ylim([0 0.025]);
  584. ylabel('Spectral Power');
  585. elseif bb==3
  586. xlim([10 35]); ylim([0 0.015]);
  587. ylabel('Spectral Power');
  588. elseif bb==4
  589. xlim([20 100]); ylim([0 0.006]);
  590. ylabel('Spectral Power');
  591. end
  592. if ll==3; xlabel('Frequency [Hz]'); end;
  593. if tt==1; ylabel('Baseline-Normalized Power');
  594. if strcmp(sVisualArea,'V1')
  595. if strcmpi(sSubjectName,'Wyman')
  596. text(3,7.5,['n=' num2str(numPooledChs) ';']);
  597. else
  598. text(3,3.5,['n=' num2str(numPooledChs) ';']);
  599. end
  600. else
  601. text(3,2.3,['n=' num2str(numPooledChs) ';']);
  602. end
  603. end
  604. if tt<6
  605. freqIndices2Plot=find(freqAxisPostCue<=100);
  606. pValuesVec=nan(1,length(freqIndices2Plot));
  607. for ff=1:length(freqIndices2Plot)
  608. pValuesVec(ff)=signrank(currSpectPowRF(:,ff),currSpectPowOUT(:,ff));
  609. end
  610. [~,~,~,pValuesVecFDR]=fdr_bh(pValuesVec);
  611. pValuesBar05FDR=nan(1,length(freqIndices2Plot));
  612. if reportPmtMinusMean
  613. pValuesBar05FDR(pValuesVecFDR<=.05)=-1;
  614. else
  615. pValuesBar05FDR(pValuesVecFDR<=.05)=0;
  616. end
  617. plot(freqAxisPostCue(freqIndices2Plot),pValuesBar05FDR,'color',[0 0 0],'linewidth',2.5);
  618. end
  619. set(gca,'XTick',0:20:100);%set(gca,'XTickLabel',{'0','10','20','30','40','50','60','70','80','90','100'});
  620. end
  621. end
  622. legend('RF','OUT','p\leq 0.05');
  623. supertitle([sSubjectName ' ' sVisualArea ' - Avg across PENs - LFPs Spectral Power ' spectWinTag{bb} ' Band']);
  624. %if reportPmtMinusMean
  625. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg_OUT-Pmt-MinusMean-' spectWinTag{bb} '.png']);
  626. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg_OUT-Pmt-MinusMean-' spectWinTag{bb} '.fig']);
  627. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg_OUT-Pmt-MinusMean-' spectWinTag{bb} '.svg']);
  628. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.fig']);
  629. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.png']);
  630. %else
  631. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.png']);
  632. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.fig']);
  633. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.svg']);
  634. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.fig']);
  635. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.png']);
  636. %end
  637. end
  638. end
  639. %% PLOT MEAN ACROSS PENS FIRST DIM OUT=OUT1/2+OUT2/2, LAYERS POOLED, OVERLAY PREFIRSTDIM/POSTSTIM
  640. if plotPmtsPenAvgOutMean
  641. timeWinTag={'PostStim','Stationary','PostCue','PreFirstDim','PreSecondDim','PreThirdDim'};
  642. rgbCmap=eye(3);
  643. for bb=1%:4
  644. hfig=figure('units','normalized','outerposition',[0 0 1 1]);
  645. for tt=2%1:3%6
  646. %for ll=1:3
  647. currSpectPowRF=[PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{1}).RF.([timeWinTag{tt} 'ZSc']);...
  648. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{2}).RF.([timeWinTag{tt} 'ZSc']);...
  649. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{3}).RF.([timeWinTag{tt} 'ZSc'])];
  650. currSpectPowOUT=[nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{1}).OUT1.([timeWinTag{tt} 'ZSc']),...
  651. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{1}).OUT2.([timeWinTag{tt} 'ZSc'])),4);
  652. nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{2}).OUT1.([timeWinTag{tt} 'ZSc']),...
  653. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{2}).OUT2.([timeWinTag{tt} 'ZSc'])),4);
  654. nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{3}).OUT1.([timeWinTag{tt} 'ZSc']),...
  655. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{3}).OUT2.([timeWinTag{tt} 'ZSc'])),4)];
  656. numPooledChs=size(currSpectPowRF,1);
  657. %subplot(3,6,(ll-1)*6+tt);
  658. %plotcmapdots([1 0 0; 0 0 1; .5 .5 .5]);
  659. if reportPmtMinusMean
  660. plot(freqAxisPostCue,zeros(1,length(freqAxisPostCue)),'k');
  661. end
  662. plotmsem(freqAxisPostCue,currSpectPowRF,'r:');
  663. %if tt<6
  664. plotmsem(freqAxisPostCue,currSpectPowOUT,'b:');
  665. %end
  666. currSpectPowPFDRF=[PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{1}).RF.PreFirstDimZSc;...
  667. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{2}).RF.PreFirstDimZSc;...
  668. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{3}).RF.PreFirstDimZSc];
  669. currSpectPowPFDOUT=[nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{1}).OUT1.PreFirstDimZSc,...
  670. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{1}).OUT2.PreFirstDimZSc),4);...
  671. nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{2}).OUT1.PreFirstDimZSc,...
  672. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{2}).OUT2.PreFirstDimZSc),4);...
  673. nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{3}).OUT1.PreFirstDimZSc,...
  674. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{3}).OUT2.PreFirstDimZSc),4)];
  675. plotmsem(freqAxisPostCue,currSpectPowPFDRF,'r');
  676. plotmsem(freqAxisPostCue,currSpectPowPFDOUT,'b');
  677. %for cnd=1:(1+2*double(tt<6)) % Pre3rdDim is just RF
  678. % plotmsem(freqAxisPostCue,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).([timeWinTag{tt} 'ZSc']),rgbCmap(cnd,:)); hold on;
  679. %end
  680. title([timeWinTag{tt} ' - ' lamLayerTag{ll} ' Layer']);
  681. if bb==1
  682. xlim([0 100]);
  683. if strcmp(sVisualArea,'V1')
  684. if reportPmtMinusMean
  685. if strcmpi(sSubjectName,'Wyman')
  686. ylim([-1 8]);
  687. else
  688. ylim([-1 6]);
  689. end
  690. else
  691. ylim([0 8]);
  692. end
  693. else
  694. if reportPmtMinusMean
  695. ylim([-1 2.5]);
  696. else
  697. ylim([0 2.5]);
  698. end
  699. end
  700. elseif bb==2
  701. xlim([0 20]); ylim([0 0.025]);
  702. ylabel('Spectral Power');
  703. elseif bb==3
  704. xlim([10 35]); ylim([0 0.015]);
  705. ylabel('Spectral Power');
  706. elseif bb==4
  707. xlim([20 100]); ylim([0 0.006]);
  708. ylabel('Spectral Power');
  709. end
  710. if ll==3; xlabel('Frequency [Hz]'); end;
  711. if tt==1; ylabel('Baseline-Normalized Power');
  712. if strcmp(sVisualArea,'V1')
  713. if strcmpi(sSubjectName,'Wyman')
  714. text(3,7.5,['n=' num2str(numPooledChs) ';']);
  715. else
  716. text(3,3.5,['n=' num2str(numPooledChs) ';']);
  717. end
  718. else
  719. text(3,2.3,['n=' num2str(numPooledChs) ';']);
  720. end
  721. end
  722. if tt<6
  723. freqIndices2Plot=find(freqAxisPostCue<=100);
  724. pValuesVec=nan(1,length(freqIndices2Plot));
  725. for ff=1:length(freqIndices2Plot)
  726. pValuesVec(ff)=signrank(currSpectPowPFDRF(:,ff),currSpectPowPFDOUT(:,ff));
  727. end
  728. [~,~,~,pValuesVecFDR]=fdr_bh(pValuesVec);
  729. pValuesBar05FDR=nan(1,length(freqIndices2Plot));
  730. if reportPmtMinusMean
  731. pValuesBar05FDR(pValuesVecFDR<=.05)=-.5;
  732. else
  733. pValuesBar05FDR(pValuesVecFDR<=.05)=0;
  734. end
  735. plot(freqAxisPostCue(freqIndices2Plot),pValuesBar05FDR,'color',[0 0 0],'linewidth',2.5);
  736. end
  737. set(gca,'XTick',0:20:100);%set(gca,'XTickLabel',{'0','10','20','30','40','50','60','70','80','90','100'});
  738. %end
  739. end
  740. %legend('RF','OUT','p\leq 0.05');
  741. supertitle([sSubjectName ' ' sVisualArea ' - Avg across PENs - LFPs Spectral Power ' spectWinTag{bb} ' Band']);
  742. %if reportPmtMinusMean
  743. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg_OUT-Pmt-MinusMean-' spectWinTag{bb} '.png']);
  744. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg_OUT-Pmt-MinusMean-' spectWinTag{bb} '.fig']);
  745. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg_OUT-Pmt-MinusMean-' spectWinTag{bb} '.svg']);
  746. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.fig']);
  747. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.png']);
  748. %else
  749. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.png']);
  750. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.fig']);
  751. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.svg']);
  752. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.fig']);
  753. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.png']);
  754. %end
  755. end
  756. end
  757. %% PLOT MEAN ACROSS PENS COLOR CODED
  758. if plotPmtsPenAvgColorCoded
  759. timeWinTag={'PostStim','Stationary','PostCue','PreFirstDim','PreSecondDim','PreThirdDim'};
  760. rgbCmap=eye(3);
  761. close all
  762. for bb=1%:4
  763. hfig=figure('units','normalized','outerposition',[0 0 1 1]);
  764. for tt=[1 3 4 5]%1:4%6
  765. for ll=1:3
  766. currSpectPowRF=PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.([timeWinTag{tt} 'ZSc']);
  767. currSpectPowOUT=nanmean(cat(4,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.([timeWinTag{tt} 'ZSc']),...
  768. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.([timeWinTag{tt} 'ZSc'])),4);
  769. numPooledChs=size(currSpectPowRF,1);
  770. subplot(3,4,(ll-1)*4+tt-(tt>2));%subplot(3,6,(ll-1)*6+tt);
  771. plotcmapdots([eye(3)]); plot(-inf,-inf,'-','linewidth',2,'color','k'); plot(-inf,-inf,':','linewidth',2,'color','k');
  772. if reportPmtMinusMean
  773. plot(freqAxisPostCue,zeros(1,length(freqAxisPostCue)),'k');
  774. end
  775. %for cnd=1:(1+2*double(tt<6)) % Pre3rdDim is just RF
  776. % plotmsem(freqAxisPostCue,PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).([timeWinTag{tt} 'ZSc']),rgbCmap(cnd,:)); hold on;
  777. %end
  778. %for cnd=1:(1+2*double(tt<6)) % RF is RED
  779. % PmtRFgrcRed=PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).(gratCondTag{cnd}).(grcColorLabel3{1}).([timeWinTag{tt} 'ZSc']);
  780. %plotmsem(freqAxisPostCue,,rgbCmap(cnd,:)); hold on;
  781. % RF case when RF is R/G/B and OUT case when RF is R/G/B
  782. PmtRFgrcR=[PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.RGB.([timeWinTag{tt} 'ZSc']);...;
  783. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.RBG.([timeWinTag{tt} 'ZSc'])];
  784. PmtRFgrcG=[PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.GRB.([timeWinTag{tt} 'ZSc']);...
  785. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.GBR.([timeWinTag{tt} 'ZSc'])];
  786. PmtRFgrcB=[PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.BRG.([timeWinTag{tt} 'ZSc']);...
  787. PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).RF.BGR.([timeWinTag{tt} 'ZSc'])];
  788. PmtOUTgrcR=[ 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.RGB.([timeWinTag{tt} 'ZSc'])+...
  789. 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.RGB.([timeWinTag{tt} 'ZSc']);...
  790. 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.RBG.([timeWinTag{tt} 'ZSc'])+...
  791. 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.RBG.([timeWinTag{tt} 'ZSc'])];
  792. PmtOUTgrcG=[ 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.GRB.([timeWinTag{tt} 'ZSc'])+...
  793. 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.GRB.([timeWinTag{tt} 'ZSc']);...
  794. 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.GBR.([timeWinTag{tt} 'ZSc'])+...
  795. 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.GBR.([timeWinTag{tt} 'ZSc'])];
  796. PmtOUTgrcB=[ 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.BRG.([timeWinTag{tt} 'ZSc'])+...
  797. 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.BRG.([timeWinTag{tt} 'ZSc']);...
  798. 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT1.BGR.([timeWinTag{tt} 'ZSc'])+...
  799. 1/2*PoolPmtStruct.(spectWinTag{bb}).(lamLayerTag{ll}).OUT2.BGR.([timeWinTag{tt} 'ZSc'])];
  800. if 1
  801. plotmsem(freqAxisPostCue,PmtRFgrcR,[1 0 0],.001); hold on;
  802. plotmsem(freqAxisPostCue,PmtRFgrcG,[0 1 0],.001); hold on;
  803. plotmsem(freqAxisPostCue,PmtRFgrcB,[0 0 1],.001); hold on;
  804. if tt<6
  805. plotmsem(freqAxisPostCue,PmtOUTgrcR,[1 0 0],.001,':'); hold on;
  806. plotmsem(freqAxisPostCue,PmtOUTgrcG,[0 1 0],.001,':'); hold on;
  807. plotmsem(freqAxisPostCue,PmtOUTgrcB,[0 0 1],.001,':'); hold on;
  808. end
  809. else % Peak Normalization
  810. plotmsem(freqAxisPostCue,PmtRFgrcR/max(nanmean(PmtRFgrcR,1)),[1 0 0],.001); hold on;
  811. plotmsem(freqAxisPostCue,PmtRFgrcG/max(nanmean(PmtRFgrcG,1)),[0 1 0],.001); hold on;
  812. plotmsem(freqAxisPostCue,PmtRFgrcB/max(nanmean(PmtRFgrcB,1)),[0 0 1],.001); hold on;
  813. if tt<6
  814. plotmsem(freqAxisPostCue,PmtOUTgrcR/max(nanmean(PmtOUTgrcR,1)),[1 0 0],.001,':'); hold on;
  815. plotmsem(freqAxisPostCue,PmtOUTgrcG/max(nanmean(PmtOUTgrcG,1)),[0 1 0],.001,':'); hold on;
  816. plotmsem(freqAxisPostCue,PmtOUTgrcB/max(nanmean(PmtOUTgrcB,1)),[0 0 1],.001,':'); hold on;
  817. end
  818. end
  819. %plotmsem(freqAxisPostCue,[PmtRFgrcR; PmtRFgrcR; PmtRFgrcR],[1 0 0],.001); hold on;
  820. %plotmsem(freqAxisPostCue,[PmtOUTgrcR; PmtOUTgrcR; PmtOUTgrcR],[0 0 1],.001); hold on;
  821. title([timeWinTag{tt} ' - ' lamLayerTag{ll} ' Layer']);
  822. if bb==1
  823. xlim([0 100]);
  824. if strcmp(sVisualArea,'V1') && strcmpi(sSubjectName,'Wyman')
  825. ylimtop=22;
  826. elseif strcmp(sVisualArea,'V1') && strcmpi(sSubjectName,'Taylor')
  827. ylimtop=6;
  828. elseif strcmp(sVisualArea,'V4') && strcmpi(sSubjectName,'Wyman')
  829. ylimtop=2;
  830. elseif strcmp(sVisualArea,'V4') && strcmpi(sSubjectName,'Taylor')
  831. ylimtop=2;
  832. end
  833. %ylimtop=2;
  834. if reportPmtMinusMean
  835. ylim([-1 ylimtop]);
  836. else
  837. ylim([0 ylimtop]);
  838. end
  839. elseif bb==2
  840. xlim([0 20]); ylim([0 0.025]);
  841. ylabel('Spectral Power');
  842. elseif bb==3
  843. xlim([10 35]); ylim([0 0.015]);
  844. ylabel('Spectral Power');
  845. elseif bb==4
  846. xlim([20 100]); ylim([0 0.006]);
  847. ylabel('Spectral Power');
  848. end
  849. if ll==3; xlabel('Frequency [Hz]'); end;
  850. if tt==1; ylabel('Baseline-Normalized Power');
  851. text(3,ylimtop*.95,['n=' num2str(size(PmtRFgrcR,1)) ';'],'color','r');
  852. text(3,ylimtop*.85,['n=' num2str(size(PmtRFgrcG,1)) ';'],'color','g');
  853. text(3,ylimtop*.75,['n=' num2str(size(PmtRFgrcB,1)) ';'],'color','b');
  854. end
  855. %if tt<6
  856. % freqIndices2Plot=find(freqAxisPostCue<=100);
  857. % pValuesVec=nan(1,length(freqIndices2Plot));
  858. % for ff=1:length(freqIndices2Plot)
  859. % pValuesVec(ff)=signrank(currSpectPowRF(:,ff),currSpectPowOUT(:,ff));
  860. % end
  861. % [~,~,~,pValuesVecFDR]=fdr_bh(pValuesVec);
  862. % pValuesBar05FDR=nan(1,length(freqIndices2Plot));
  863. % if reportPmtMinusMean
  864. % pValuesBar05FDR(pValuesVecFDR<=.05)=-1;
  865. % else
  866. % pValuesBar05FDR(pValuesVecFDR<=.05)=0;
  867. % end
  868. % plot(freqAxisPostCue(freqIndices2Plot),pValuesBar05FDR,'color',[.5 .5 .5],'linewidth',2.5);
  869. %end
  870. set(gca,'XTick',0:20:100);%set(gca,'XTickLabel',{'0','10','20','30','40','50','60','70','80','90','100'});
  871. end
  872. end
  873. legend('RF is red','RF is green','RF is blue','Attend RF','Attend OUT');
  874. supertitle([sSubjectName ' ' sVisualArea ' - Avg across PENs - LFPs Spectral Power ' spectWinTag{bb} ' Band']);
  875. if reportPmtMinusMean
  876. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '_COLORCODED.png']);
  877. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.fig']);
  878. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.svg']);
  879. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.fig']);
  880. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-MinusMean-' spectWinTag{bb} '.png']);
  881. else
  882. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '_COLORCODED.png']);
  883. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.fig']);
  884. % saveas(hfig,['./Summary/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.svg']);
  885. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.fig']);
  886. % saveas(hfig,['./' sSubjectName ' ' sVisualArea '/PowSpects/' sSubjectName(1) sVisualArea '-PEN_Avg-Pmt-' spectWinTag{bb} '.png']);
  887. end
  888. end
  889. end
  890. end