We use cookies to ensure you get the best experience on our website
Home Explore Help News
Register Sign In
doi
/
Ronny_Bergmann_AirtrackMotorPlanning_TrackedEyePositions
forked from larkumlab/Ronny_Bergmann_AirtrackMotorPlanning_TrackedEyePositions
DOI
10.12751/g-node.5jz67s
1
0
Fork 0
Files

DeepLabCut-aided pupil-position tracking data for the "AirtrackMotorPlanning" project (examines whether whiskers and pupil positions predict the animal's motor plans).

Branch: master
Branches Tags
Ronny_Bergma...
Keisuke Sehara e39430d43f modify datacite 1 year ago
MLA005756 573762ca22 migrate from the original dataset 4 years ago
MLA005757 573762ca22 migrate from the original dataset 4 years ago
MLA007518 ba0e99e8ce add missing data for MLA007518 and MLA007519 3 years ago
MLA007519 ba0e99e8ce add missing data for MLA007518 and MLA007519 3 years ago
.gitignore 519f9d6919 Initial commit 4 years ago
LICENSE 519f9d6919 Initial commit 4 years ago
README.md 67bfe6fc6d update ORCID 1 year ago
SaveEyelidROI.ijm 83cecfe1dd update README 1 year ago
datacite.yml e39430d43f modify datacite 1 year ago

README.md

Eye tracking data for: Bergmann, Sehara et al., 2022

DeepLabCut-aided pupil-position tracking data for the "AirtrackMotorPlanning" project (examines whether whiskers and pupil positions predict the animal's motor plans).

The dataset stored here is part of the root data repository, and it is:

Contents

File organization

File names

The files are (mostly) organized as: <ANIMAL>/<SESSION>/<DOMAIN>/<ANIMAL>_<SESSION>_<DOMAIN>_run<TRIAL>, where:

  • ANIMAL representing the ID of the animal (in the pattern MLAxxxxxx).
  • SESSION being the name of the session (in the pattern sessionYYYY-MM-DD-001).
  • DOMAIN representing the domain of recording (see below).
  • TRIAL being the trial index during the session.

Domain names

Domain name Description
left CSV files containg the coordinates related to the left eye (in pixels).
left-eyelid PNG files of average projection images of the left eye during each trial, and CSV files representing the manually-drawn upper and lower eyelids.
right CSV files containg the coordinates related to the right eye (in pixels).
right-eyelid PNG files of average projection images of the right eye during each trial, and CSV files representing the manually-drawn upper and lower eyelids.

Drawling eyelids

Based on the average-projection images, the top and the bottom eyelids were drawn manually using the freehand selection tool of ImageJ. The ROIs were then exported using the SaveEyelidROI.ijm macro.

Copyright (c) 2022, Ronny Bergmann, Keisuke Sehara, Sina E. Dominiak, Julien Colomb, Jens Kremkow, Matthew E. Larkum, Robert N. S. Sachdev, CC-BY 4.0

datacite.yml
Title Eye-tracking data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack)
Authors Bergmann,Ronny;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-1477-7502
Sehara,Keisuke;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0003-4368-8143
Dominiak,Sina E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.
Colomb,Julien;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-3127-5520
Kremkow,Jens;Charité–Universitätsmedizin Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-7077-4528
Larkum,Matthew E.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0001-9799-2656
Sachdev,Robert N.S.;Institut für Biologie, Humboldt Universität zu Berlin, Berlin, 10117 Germany.;ORCID:0000-0002-6627-0199
Description Data repository for Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS, 2022 eNeuro "Coordination between eye movement and whisking in head fixed mice navigating a plus-maze". This repository contains an intermediate eye-tracking dataset based on the raw dataset.
License Creative Commons 4.0 Attribution (https://creativecommons.org/licenses/by/4.0/)
References Bergmann R, Sehara K, Dominiak SE, Kremkow J, Larkum ME, Sachdev RNS (2022) Coordination between eye movement and whisking in head fixed mice navigating a plus-maze. [https://doi.org/10.1523/ENEURO.0089-22.2022] (IsSupplementTo)
Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.j9wxqe [https://doi.org/10.12751/g-node.j9wxqe] (IsPartOf)
Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Raw data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.g8f1jc [https://doi.org/10.12751/g-node.g8f1jc] (IsDerivedFrom)
Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) DeepLabCut model repository for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.1kd2qf [https://doi.org/10.12751/g-node.1kd2qf] (IsCompiledBy)
Bergmann R, Sehara K, Dominiak SE, Colomb J, Kremkow J, Larkum ME, Sachdev RN (2022) Formatted data for Bergmann, Sehara et al., 2022 eNeuro (eye-whisker coordination on Airtrack). G-Node. https://doi.org/10.12751/g-node.hhxe3v [https://doi.org/10.12751/g-node.hhxe3v] (IsSourceOf)
Funding EU, EU.670118
EU, EU.327654276
EU, EU.720270
EU, EU.785907
EU, EU.945539
DFG, DFG.250048060
DFG, DFG.246731133
DFG, DFG.267823436
Keywords Neuroscience
Behavioral tracking
Motor coordination
Whiskers
Pupil tracking
Airtrack
Resource Type Dataset