Dataset_Doron_Shin_et_al_PRhL1_Science_2020/codes/Electrophysiology analysis/AllCellsBurstPSTH.m

function Group = AllCellsBurstPSTH(Group,preStim,postStim, binsize, mkplt)
% ex. Controls = AllCellsBurstPSTH(Controls)
% Compute burst psth and add a field of the input structure
%       INPUT: 
%               Group - (required) Experimental group structure containing
%               all cell information
%               mkplt - 1 to plot 0 to not plot
%       OUTPUT:
%               Group - original input structure plus a new field bpsth
            

for i = 1:length(Group)
    BurstTimes = Group(i).BurstTimes;
    cellname = Group(i).CellName;
    
    if length(Group(i).Mixes) ~=0
        Mixes = Group(i).Mixes;
        Mixes(:,3) = 10;
        Microstims = [Group(i).Microstims; Mixes];
    else 
        Microstims = [Group(i).Microstims];
    end
    
    %HighIntensity = find(Microstims(:,3) >= 40);
    %LowIntensity = find(Microstims(:,3) < 40);
    HitTimes = find(Microstims(:,2) <= 1.2 & Microstims (:,2) > 0.1);
    
    Hits = Microstims(HitTimes,1);
    %HighStimTimes = Microstims(intersect(HighIntensity, HitTimes),1);
    %LowStimTimes = Microstims(intersect(LowIntensity, HitTimes),1);
    
 
    
    
    %[bpsthNormHigh,numTrialsHigh edges] = RasterPSTH (HighStimTimes, BurstTimes(1:2:end), preStim, postStim, binsize,'mkplt', false );
    %saveas(gcf, [cd, '\RasterPSTH\', cellname, 'RasterPSTHhigh.fig'])

    
    %[bpsthNormLow,numTrialsLow edges] = RasterPSTH (LowStimTimes, BurstTimes(1:2:end), preStim, postStim, binsize,'mkplt', false );
    %saveas(gcf, [cd, '\RasterPSTH\', cellname, 'RasterPSTHlow.fig'])
    
    % Total microstim
    [bpsthNorm,numHits, edges] = RasterPSTH (Hits, BurstTimes(1:2:end), preStim, postStim, binsize,'mkplt', mkplt);
    
    %Group(i).bpsthNormHigh= bpsthNormHigh;
    %Group(i).numTrialsHigh = numTrialsHigh;
    %Group(i).bpsthNormLow = bpsthNormLow;
    %Group(i).numTrialsLow = numTrialsLow;
    Group(i).bpsthNorm= bpsthNorm;
    Group(i).numHits= numHits;
    %close all
end