Neural effects of dopaminergic compounds revealed by multi-site electrophysiology and interpretable machine-learning

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README.md

DA-Pharmacology_LFP_data

Neural effects of dopaminergic compounds revealed by multi-site electrophysiology and interpretable machine-learning.

The RawData folder contains local field potential (LFP) recordings obtained from depth electrodes in the mice brain regions, including the prelimbic cortex (PrL), mediodorsal thalamus (MD), dorsal hippocampal fissure (dCA1), dorsal hippocampal CA3 subfield (dCA3), and ventral hippocampal fissure (vHC). For more details see Kapanaiah, S. K. T., Rosenbrock, H., Hengerer, B., & Kätzel, D. (2024). Neural effects of dopaminergic compounds revealed by multi-site electrophysiology and interpretable machine-learning. Frontiers in Pharmacology. The scripts for estimating connectivity and activity are available on GitHub. https://github.com/KaetzelLab/DA-Pharmacology-ephys-analysis-2024.git

Data Folder and file information

RawData - Folder contains raw LFP .Mat files.

Ephys Data information - The text file contains information about data structure of the raw dat mat files.

Pharma Coh Details - The excel file contains electrode scores and the Injection details.

datacite.yml
Title Neural effects of dopaminergic compounds revealed by multi-site electrophysiology in mice and interpretable machine-learning
Authors Kapanaiah,Sampath K.T;Institute for Applied Physiology, Ulm University, Germany
Rosenbrock,Holger;Boehringer Ingelheim Pharma GmbH & Co. KG, Div. Research Germany, Biberach an der Riss, Germany
Hengerer,Bastian;Boehringer Ingelheim Pharma GmbH & Co. KG, Div. Research Germany, Biberach an der Riss, Germany
Kaetzel,Dennis;Institute for Applied Physiology, Ulm University, Germany
Description The LFP_RawData folder contains local field potential (LFP) recordings obtained from depth electrodes in the mice brain regions, including the prelimbic cortex (PrL), mediodorsal thalamus (MD), dorsal hippocampal fissure (dCA1), dorsal hippocampal CA3 subfield (dCA3), and ventral hippocampal fissure (vHC). Pharmaco-LFP experiments were conducted approximately every third day in a within-subject design with a latin-square, randomized drug-assignment across the cohort. Applications included: saline (Sal; vehicle 1), 0.1% TWEEN80/saline (T/Sal; vehicle 2), 1 and 3 mg/kg clozapine (CLZ1 and CLZ3; clozapine dihydrochloride, HB6129, HelloBio, GB), 0.5 mg/kg raclopride (Raclo; S(-)raclopride(+)-tartrate, R121 Sigma, DE), 0.1 mg/kg SCH23390 (SCH; SCH23390 hydrochloride, 0925 Tocris, GB), and 2 mg/kg amphetamine (Amph; d-amphetamine sulfate, A-5880, Sigma); vehicle 2 was used for raclopride, all other compounds were applied in saline. Mice were recorded in Type-III open-field cages (Tecniplast, IT) with fresh saw-dust for a 10 min baseline period, after which the compound was applied i.p., followed by a further recording for 50 min.
License CC0 (http://creativecommons.org/publicdomain/zero/1.0)
References Kapanaiah, S. K. T., Rosenbrock, H., Hengerer, B., & Kätzel, D. (2024). Neural effects of dopaminergic compounds revealed by multi-site electrophysiology and interpretable machine-learning. Frontiers in Pharmacology, 15. https://doi.org/10.3389/fphar.2024.1412725 [doi: 10.3389/fphar.2024.1412725] (IsSupplementTo)
Funding
Keywords Neuroscience
Antipsychotics
Neural connectivity
Granger causality
Power spectral density
Electrophysiology
Pharmaco-EEG
Local field potential
Resource Type Dataset