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README.md

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 # AIDAconnect_test_data
 
-AIDAconnect test data
+Longitudinal MRI (T2-weighted, rs-fMRI and DTI) of mice with cortical stroke and treatment or control substance; 6 time points over 4 weeks post stroke.
+
+## Files:
+* MRI_raw_data - contains all raw data in Bruker 2dseq format and the original Bruker folder structure
+* MRI_proc_data - contains all data processed with the [AIDAmri](https://github.com/aswendtlab/AIDAmri) pipeline. Processing steps: define stroke masks, convert Bruker to NIfTI-1 data format, image re-orientation, bias-field correction, brain extraction, region-of-interest segmentation, registration with the [Allen Mouse Brain Atlas](https://www.nature.com/articles/nature05453)[ (CCFv3)](http://help.brain-map.org/display/mousebrain/Documentation), processing for functional and structural connectivity analysis.
+* MRI_proc_data is ready to use for network analysis using [AIDAconnect](https://github.com/aswendtlab/AIDAconnect) 
+
+## Authors:
+Markus Aswendt, Niklas Pallast, Olivia Käsgen, Frederique Wieters, Felix Schmitt, Leon Scharwächter.