2023_Blaschke_Stroke_tDCS_rsfMRI/scripts/toolbox/fMRI-Quality-Checker-master/example_html_output.html

<H2>Log</H2>
<BR>Subject:  sub-01
<BR>Date/time:  03-Sep-2018 15:36:53<H2>Imaging info</H2>
Volumes:  375
<BR>Voxels (x,y,z):  64, 64, 30<H2>Timeseries summary</H2>
<TABLE><TR><TD><img src="timeseries_summary.png" alt="no picture" width=700 height=600></TD></TR></TABLE><H2>QC Metrics</H2>
FD threshold (mm):  0.2
<BR>FD outliers:  111
<BR>Total FD:  66.2627
<BR>Mean FD:  0.1767
<BR>Mean Zscore:  0.75768
<BR>GCOR:  0.2341
<BR>tSNR (brain):  216.1577
<BR>tSNR (GM):  196.9383
<BR>tSNR (WM):  302.7258
<BR>tSNR (CSF):  109.9417<H2>QC brain images</H2>
<TABLE><TR><TD><img src="mean_epi.png" alt="no picture" width=700 height=600></TD></TR></TABLE>
<TABLE><TR><TD><img src="stddev_epi.png" alt="no picture" width=700 height=600></TD></TR></TABLE>
<TABLE><TR><TD><img src="tsnr_whole.png" alt="no picture" width=700 height=600></TD></TR></TABLE>
<TABLE><TR><TD><img src="tsnr_brain.png" alt="no picture" width=700 height=600></TD></TR></TABLE>
<TABLE><TR><TD><img src="mask_contour.png" alt="no picture" width=700 height=700></TD></TR></TABLE>